Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0428 |
Symbol | phaC |
ID | 5711344 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 419269 |
End bp | 421152 |
Gene Length | 1884 bp |
Protein Length | 627 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641266332 |
Product | poly(3-hydroxyalkanoate) polymerase |
Protein accession | YP_001531777 |
Protein GI | 159042983 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG3243] Poly(3-hydroxyalkanoate) synthetase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAAAAC GGCAGACCAT TTCCGCACCG ACGGACGACA TCGATCCGCG CGCGGACCAT CGGGGCGGCC CGGTCGCAGC ACCTGTACCC TCGACACCCC CGGCACGGGC CGCCGACGGT CCGGAGGTCG CGCCGGAGCT TGGCCCGCTC TGCCCTGCCG AGAAGCCGGA CAGGCACGGG CTGTCGATGC TCGACCAGGC GACCAAGGCA CATCTGGCGC GGCTCACGCA GGGTATCTCG CCCTTCGGGC TGACCTCCAG TTTCTTCGAT TGGGGGATGC ATCTGGCCGC CTCGCCGGGC AAGCAGATGC AACTGGCCGA CAAGGCGCAG CGCAAGGCGG CGAAGCTGGC AATGGCGGCG AGCCGGATGG CCCTGGGCAA GTCCGGTGCC CCCTGCATCG ATCCGCTGAT CTATGACAAG CGTTTCGTGG CCCCGGAATG GCAACGCTGG CCCCATAACC TGATCTACCA GAGTTTCCTG ATGACCCAGC AGTGGTGGTA CAACGCCACC AACGATATAG ACGGTCTGTC GCGGTGCGAC GAGCAGGTGG TGTCCTTCGT CATGCGCCAG CTGCTCGACA TGATGTCGCC GGCGAACGGT CTGTGGACCA ACCCGGAGGT TCTGGCCGAA ACCACGCGGA CCTTCGGGGC CAATCTGGTG CAGGGGACCC AGAACCTGAT CGAGGACATG GAACGGGCGC TGGCGGGCAA GCCGCCCGTG GGCGCGGAAG ACTACCTGCC CGGGCGCGAG GTCGCGGTGA CGCCGGGCAA GGTCGTCCAT CGCAGCCACC TGTTCGAGCT GATCCAGTAC GCGCCGCAGA CCGAGACGGT TGCGGCCGAG CCCATCCTGA TCGTGCCGGC CTGGATCATG AAATACTATA TTCTCGACCT GTCGCCGCAT AACTCGCTGG TCCGCTACCT GGTGGAGCAG GGCTTCACCG TCTTCATGAT CTCGTGGCGC AACCCGGATG CGGGGGACCG CGATCTGGGC ATGGAGGATT ATCTGGCCGC GCTCGATACG GCGCTCGACG AGATCGGTGC GATCGTGCCC GAAACGGGTG TGCACGGTGT CGGCTACTGC TTGGGCGGTA CGCTGTTGTC GGTGAAGGCG GCGCTAATGG CGCGCGACGG GGACGACCGG CTGAAGACGC TGAGCCTGCT GGCGACCCAG ACCGATTTCG AAGACCCCGG CGAGTTGCAA CTGTTCATCA GCGAGAGCCA GCTGTCCTAT CTCGACCACA TGATGTGGGA CCAGGGGTAT CTGGACACCA AGCAGATGGC GGGGGCGTTC CAGCTTCTGC GGTCGCGCGA CCTGATCTGG TCGCGCTATG TCCACGAGTA CCTGATGGGC CGCCGTCAGC CGATGTTCGA CCTGATGGCG TGGAACGCGG ATGCCACGCG CATGCCCTAC CGGATGCACA GCGAGTATCT GCGCAGCATG TTCCTCGACA ACCAACTGGC GCAGGGGCAA TACCGGGTCG GCGGCAGGCC GGTGGCGCTC AGCGATATCC GGGCGCCGGT GTTCTGCGTC TCGACCACGG GCGATCACGT CGCGCCGTGG CAGTCGGTCT ACAAGCTGCA CCTGCTGGCC GATACCGACA TCACCTTCGT GCTGACATCG GGCGGGCACA ATGCCGGCAT CGTCAGCGAA CCGGGGCACA AGGGCCGCAG CTATCAGATC CGGACCCTTC CGGACGCCGA GCATTACATC CCGCCCGAGG ACTGGCGCGC GCAGACGCAG GTGCAGGACG GGTCCTGGTG GCCTGAGCAT GTCGCCTGGC TGCGGGCGCA TGGCGCGCCA GAAGAGGGGC CGCCGCCGCC CATGGGGCGC AAGGGTGCGG GCGATCTGCG AGACGCGCCG GGCGCCTATG TCCTGCAACC CTGA
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Protein sequence | MTKRQTISAP TDDIDPRADH RGGPVAAPVP STPPARAADG PEVAPELGPL CPAEKPDRHG LSMLDQATKA HLARLTQGIS PFGLTSSFFD WGMHLAASPG KQMQLADKAQ RKAAKLAMAA SRMALGKSGA PCIDPLIYDK RFVAPEWQRW PHNLIYQSFL MTQQWWYNAT NDIDGLSRCD EQVVSFVMRQ LLDMMSPANG LWTNPEVLAE TTRTFGANLV QGTQNLIEDM ERALAGKPPV GAEDYLPGRE VAVTPGKVVH RSHLFELIQY APQTETVAAE PILIVPAWIM KYYILDLSPH NSLVRYLVEQ GFTVFMISWR NPDAGDRDLG MEDYLAALDT ALDEIGAIVP ETGVHGVGYC LGGTLLSVKA ALMARDGDDR LKTLSLLATQ TDFEDPGELQ LFISESQLSY LDHMMWDQGY LDTKQMAGAF QLLRSRDLIW SRYVHEYLMG RRQPMFDLMA WNADATRMPY RMHSEYLRSM FLDNQLAQGQ YRVGGRPVAL SDIRAPVFCV STTGDHVAPW QSVYKLHLLA DTDITFVLTS GGHNAGIVSE PGHKGRSYQI RTLPDAEHYI PPEDWRAQTQ VQDGSWWPEH VAWLRAHGAP EEGPPPPMGR KGAGDLRDAP GAYVLQP
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