| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0402 |
|---|
| Symbol | |
|---|
| ID | 5711318 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 396006 |
|---|
| End bp | 396350 |
|---|
| Gene Length | 345 bp |
|---|
| Protein Length | 114 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641266307 |
|---|
| Product | CRISPR-associated protein Cas2 |
|---|
| Protein accession | YP_001531752 |
|---|
| Protein GI | 159042958 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3512] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01573] CRISPR-associated endoribonuclease Cas2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.687205 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACG CCCCCGCCTT TCTCTCTGGA TACCGGATCA TGTGGATACT CGTGATGTTC
GACCTGCCCA CCGACACCAA GTCCCAGCGC AAGGCCGCCA CCGCATTCCG GAATTTCCTT
CTGGATGAAG GGTTCGAGCG GAGCCAGTTC TCGGTCTACG CCCGCTTCGT GAACGGCAAG
GAGGCGTTCC AGACCCGCGT GCGCCGGATC GAACGAAACC TGCCCGAGAA AGGCGACATC
CAGGTCCTGA ACTTCACGGA CCGCCAATAC CGTGATATCG TCCACTTCTC GGATCAGGGC
CGAAGGGCGG CTCGGAAGAA TCCAGAGCAG CTTGCGCTTT TTTGA
|
|---|
| Protein sequence | MTDAPAFLSG YRIMWILVMF DLPTDTKSQR KAATAFRNFL LDEGFERSQF SVYARFVNGK
EAFQTRVRRI ERNLPEKGDI QVLNFTDRQY RDIVHFSDQG RRAARKNPEQ LALF
|
|---|
| |