| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0401 |
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| Symbol | |
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| ID | 5711317 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 395098 |
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| End bp | 396009 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641266306 |
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| Product | CRISPR-associated protein Cas1 |
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| Protein accession | YP_001531751 |
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| Protein GI | 159042957 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1518] Uncharacterized protein predicted to be involved in DNA repair |
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| TIGRFAM ID | [TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03639] CRISPR-associated endonuclease Cas1, NMENI subtype |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.455858 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCAGA TCGTCGATAT CGCCACGGAT GGGCGGCATC TCTCGCGTGA CCGGGGCTTC
CTGAAGGTCA GCGAGGGCGC CCGGGAAATC GGCCGTATCC CCCTGGACCA GATCGCGGGC
GTCATCGTGC ACGCCCATGG CACCACCTGG ACCACCTCCC TTCTGACCGA GCTGGCGGAT
CGCGGGGCGC CGGTCGTGCT CTGCGGGGCC AACCACGCGC CGCGCTCGGT CCTCATGCCG
CTCGACGGGC ACCATGCCCA GGGCGCGCGC CTGCGGGCAC AGTGGCAGGC CAGGGCCCCG
CTCGTGAAAC AGGCCTGGAA GCAGACGGTA ATCGCGAAGA TCGCCATGCA GGCCGCCGCC
TTGGAGGCCA TGGGCGAACC CCATGCCCCC GTCGGCATGC TCGCGCGCAA GGTGACCAGC
GGCGATGCCA CCAATGTCGA GGCGCAGGCC GCGCGTCTCT ACTGGCCCCG AATGATGGGC
ACCGAGTTCC GCCGCGACCG CACCGCCCCC GACCTCAACG CGCTCCTGAA CTATGGCTAC
ACGGTGCTGC GCGCCGCCAC CGCCCGTGCG GTCGTGGCCG CAGGGCTGCA CCCGACCATC
GGCCTGCACC ATTCGAACCG CGGCAACGCC TTTGCCCTGG CCGACGACCT GATGGAGCCG
TTCCGCCCGC TCGTCGATTG TTGCGTGCGC GGCCTAGCCG CCCGTAACGG ACCCCAGGTC
GATCCCGCGG CCAAGCAGTC CCTAGCGCGG CTCATCGCGC TGGACCTGCC CCTCGGCGAC
AGCCTCACCC CGGTTTCCGT CGCGCTCGGC AAGCTTGCCA TCTCTCTCGG TCAGAGCTTC
GAGTCCGGAA CGCTGGATCT CGCCCTGCCT GCACCGCCCG ATGCGCTGAC CCTTGCAGGC
CTCGGCGCAT GA
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| Protein sequence | MDQIVDIATD GRHLSRDRGF LKVSEGAREI GRIPLDQIAG VIVHAHGTTW TTSLLTELAD
RGAPVVLCGA NHAPRSVLMP LDGHHAQGAR LRAQWQARAP LVKQAWKQTV IAKIAMQAAA
LEAMGEPHAP VGMLARKVTS GDATNVEAQA ARLYWPRMMG TEFRRDRTAP DLNALLNYGY
TVLRAATARA VVAAGLHPTI GLHHSNRGNA FALADDLMEP FRPLVDCCVR GLAARNGPQV
DPAAKQSLAR LIALDLPLGD SLTPVSVALG KLAISLGQSF ESGTLDLALP APPDALTLAG
LGA
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