| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0395 |
|---|
| Symbol | |
|---|
| ID | 5711311 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 384765 |
|---|
| End bp | 385958 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641266300 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_001531745 |
|---|
| Protein GI | 159042951 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.887583 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAAAC TGACCAAGCG CCTTGTCGAA AGCCTAACCG TCGAAAGCCG TGATTACTTC
GTGTGGGACG ACGAGGTGAA AGGCTTTGGT GTCCGTGTCA TGCGCTCCGG AACCCGCACT
TATCAAGTCC AGTATCGCAA AGGCGGACGG ACCCGTCGCG CCTCCATCGG TCGGCATGGA
ACCGTGACAG TCCAGCAGGC CCGGCAACGC GCCAAAGAGC TGCTTGGGGA CGTGGCCAGT
GGCGGTAACC CGGTGGAAGA GATCAGCCAG CACCGGCGCG CCTCAACCGT CGCGGCCCTC
TGTGAACGGT TTTTCGAGGC TCATGTCATG GAGCGCTGCA AGCCAAGCAC TCAGCGCGAG
TATCGCCGAT CTATCGACTT CTTCATTAAT CCAGCCATAG GCACCTTCAA AGTCGTCGAT
GTCGAACGCC GCGATATCGC GGAACTGCAC CACAAACTCA GAGACAAGCC ATACCAAGCC
AACCGAACGC TCGGTGTGTT GTCGAAGATG TTCAACCTGG CTGAAGTCTG GGGCCTTCGC
CCGGATGGAT CCAACCCTTG CCGCCATGTT CCCAAGTACC GCGAACGAAA ACGGGAGCGC
TACCTGAGCC AAGCGGAGTT GCGTCGGTTG GGCGAAGTGC TTGCTGACTG CGAACGGTCC
GGTTCGGAAA GCCCCTATGT TGTGGCCGCG TTCAAGTTGC TGATCCTCAC CGGCTGCCGC
CTCGGAGAAA TTCAGACGTT ACGTTGGGAC TACCTTACGC CCAACGGGAT GGAACTGCCG
GACAGCAAAA CCGGGGCGCG GCGCATTCCT CTGCCATCAG CTGCCCGCGC AGTCCTGGAC
GCCCTGCCCC ACGATCCCGG CAATCCCTAT GTCATTGCGG GAAGGATTGA AGGCCAGCAC
ATCACCGACT TGCAGCACCC TTGGCGGCGC ATTCGCGATC TGGCGGGCCT GAATGACGTC
CGGATTCATG ATCTGCGCCA TACCTATGCC TCAAACGCGG TATCGTCTGG GATGCCAATA
CAGATGGTGG GACGCTTGCT CGGGCATACT CAGCTTCAGA CAACCATGCG CTATGCACAC
CTTGCGGATG ATCCGGTGCG CAAGGCGGCA GAGGAAAACG CTGCAGCATT GAGTGAAGGG
TTGGGACTGG GTTTGCGCGC AAGAACCACA CCGCTACGCG TGGTCAAAGG ATAG
|
|---|
| Protein sequence | MPKLTKRLVE SLTVESRDYF VWDDEVKGFG VRVMRSGTRT YQVQYRKGGR TRRASIGRHG
TVTVQQARQR AKELLGDVAS GGNPVEEISQ HRRASTVAAL CERFFEAHVM ERCKPSTQRE
YRRSIDFFIN PAIGTFKVVD VERRDIAELH HKLRDKPYQA NRTLGVLSKM FNLAEVWGLR
PDGSNPCRHV PKYRERKRER YLSQAELRRL GEVLADCERS GSESPYVVAA FKLLILTGCR
LGEIQTLRWD YLTPNGMELP DSKTGARRIP LPSAARAVLD ALPHDPGNPY VIAGRIEGQH
ITDLQHPWRR IRDLAGLNDV RIHDLRHTYA SNAVSSGMPI QMVGRLLGHT QLQTTMRYAH
LADDPVRKAA EENAAALSEG LGLGLRARTT PLRVVKG
|
|---|
| |