Gene Dshi_0395 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_0395 
Symbol 
ID5711311 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp384765 
End bp385958 
Gene Length1194 bp 
Protein Length397 aa 
Translation table11 
GC content59% 
IMG OID641266300 
Productphage integrase family protein 
Protein accessionYP_001531745 
Protein GI159042951 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.887583 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAAAAC TGACCAAGCG CCTTGTCGAA AGCCTAACCG TCGAAAGCCG TGATTACTTC 
GTGTGGGACG ACGAGGTGAA AGGCTTTGGT GTCCGTGTCA TGCGCTCCGG AACCCGCACT
TATCAAGTCC AGTATCGCAA AGGCGGACGG ACCCGTCGCG CCTCCATCGG TCGGCATGGA
ACCGTGACAG TCCAGCAGGC CCGGCAACGC GCCAAAGAGC TGCTTGGGGA CGTGGCCAGT
GGCGGTAACC CGGTGGAAGA GATCAGCCAG CACCGGCGCG CCTCAACCGT CGCGGCCCTC
TGTGAACGGT TTTTCGAGGC TCATGTCATG GAGCGCTGCA AGCCAAGCAC TCAGCGCGAG
TATCGCCGAT CTATCGACTT CTTCATTAAT CCAGCCATAG GCACCTTCAA AGTCGTCGAT
GTCGAACGCC GCGATATCGC GGAACTGCAC CACAAACTCA GAGACAAGCC ATACCAAGCC
AACCGAACGC TCGGTGTGTT GTCGAAGATG TTCAACCTGG CTGAAGTCTG GGGCCTTCGC
CCGGATGGAT CCAACCCTTG CCGCCATGTT CCCAAGTACC GCGAACGAAA ACGGGAGCGC
TACCTGAGCC AAGCGGAGTT GCGTCGGTTG GGCGAAGTGC TTGCTGACTG CGAACGGTCC
GGTTCGGAAA GCCCCTATGT TGTGGCCGCG TTCAAGTTGC TGATCCTCAC CGGCTGCCGC
CTCGGAGAAA TTCAGACGTT ACGTTGGGAC TACCTTACGC CCAACGGGAT GGAACTGCCG
GACAGCAAAA CCGGGGCGCG GCGCATTCCT CTGCCATCAG CTGCCCGCGC AGTCCTGGAC
GCCCTGCCCC ACGATCCCGG CAATCCCTAT GTCATTGCGG GAAGGATTGA AGGCCAGCAC
ATCACCGACT TGCAGCACCC TTGGCGGCGC ATTCGCGATC TGGCGGGCCT GAATGACGTC
CGGATTCATG ATCTGCGCCA TACCTATGCC TCAAACGCGG TATCGTCTGG GATGCCAATA
CAGATGGTGG GACGCTTGCT CGGGCATACT CAGCTTCAGA CAACCATGCG CTATGCACAC
CTTGCGGATG ATCCGGTGCG CAAGGCGGCA GAGGAAAACG CTGCAGCATT GAGTGAAGGG
TTGGGACTGG GTTTGCGCGC AAGAACCACA CCGCTACGCG TGGTCAAAGG ATAG
 
Protein sequence
MPKLTKRLVE SLTVESRDYF VWDDEVKGFG VRVMRSGTRT YQVQYRKGGR TRRASIGRHG 
TVTVQQARQR AKELLGDVAS GGNPVEEISQ HRRASTVAAL CERFFEAHVM ERCKPSTQRE
YRRSIDFFIN PAIGTFKVVD VERRDIAELH HKLRDKPYQA NRTLGVLSKM FNLAEVWGLR
PDGSNPCRHV PKYRERKRER YLSQAELRRL GEVLADCERS GSESPYVVAA FKLLILTGCR
LGEIQTLRWD YLTPNGMELP DSKTGARRIP LPSAARAVLD ALPHDPGNPY VIAGRIEGQH
ITDLQHPWRR IRDLAGLNDV RIHDLRHTYA SNAVSSGMPI QMVGRLLGHT QLQTTMRYAH
LADDPVRKAA EENAAALSEG LGLGLRARTT PLRVVKG