| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0366 |
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| Symbol | rpoE2 |
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| ID | 5711275 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 349872 |
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| End bp | 350441 |
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| Gene Length | 570 bp |
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| Protein Length | 189 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641266264 |
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| Product | RNA polymerase sigma factor RpoE |
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| Protein accession | YP_001531716 |
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| Protein GI | 159042922 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGGCACTGG CGCACAAGAC GACGATGGAG CGGCCCCTCG ACATGGAATG GGTCTCGGTC
ATGCTGGCCA TTCGCGACCG GCAGGATACG GCTGCATTCG CGCGCCTGTT CCGGCACTTC
GCGCCGCGCA TCAAGGCCTT CCTGATCAAG TCCGGCGCCT CCGACACCCT GGCCGAGGAT
TGCGCGCAGG ACGTCATGAC CACGGTCTGG CAGAAGGCGC ATATGTTCGA TCCCAGCCGC
GCGAGCGTAG CCACCTGGAT CTTCACCATC GCCCGGAACC GCCGGATCGA CATGCTCCGC
AAGGAACGCC GCCCGGAACC AGAGGAGCTT CCCTGGGGTC CGGAACCCGA GCCCGACCAG
GCCGATGTCC TCATGCTTCA ACAAGAAAGC GAAAAACTTC AGGCCGCACT GATCCAGTTG
CCCGAGAAGC AACGTATACT TGTTGAACGT TGCTATTTCG GGGATATGTC CCACAGCGAG
ATTGCAACCC AAACGGGTTT ACCCCTTGGC ACGATCAAGT CGCGACTTAG GTTAGCGCTG
GACAAGCTGA GGCATGAATT AAAGCAGTAG
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| Protein sequence | MALAHKTTME RPLDMEWVSV MLAIRDRQDT AAFARLFRHF APRIKAFLIK SGASDTLAED
CAQDVMTTVW QKAHMFDPSR ASVATWIFTI ARNRRIDMLR KERRPEPEEL PWGPEPEPDQ
ADVLMLQQES EKLQAALIQL PEKQRILVER CYFGDMSHSE IATQTGLPLG TIKSRLRLAL
DKLRHELKQ
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