| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0329 |
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| Symbol | ydaM |
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| ID | 5711579 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 317056 |
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| End bp | 318645 |
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| Gene Length | 1590 bp |
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| Protein Length | 529 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641266225 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001531679 |
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| Protein GI | 159042885 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAGCG CCCGGCATGC GGCGCGCGCA GCAAGAGGCA GTGGCGTGTT GGTTTCACGA
TTTCTCGATT TCTTCCGATC CACCGGCAAG CAGTTGTTCC GCGACCCCGC ATTGCTGGCC
GGGTTCATCC CGCTCTTCGT GGCGCTGTCC TATTCGACGC GGGACATTCG TTGGCTGATC
GGGGCCAGCA CGCTCATCCC TTTCCTGGTT CTGGCGATCA GGGCCTTCGA TGTGGTCACC
TCTCCAAAGG GCGGGCGCGA CGGGCTGACG GGCCTGCCCT GCCGCGCCGC GTTGCTGGAG
GTGCTGGACA AGTACTTCGC CACACCCGGG GCCAGTACCC GGACCGCGGC GTGCATGGTC
ATCGACCTCG ACGACTTTCA CAGTTTCAAT GAACGCTGGG GACGTGAGGC TGCAGACGAG
GTTCTGCGCC AGACCGCGAA TCGCCTGCGC AGCGCCGTGC GCGACAACGA CCTCGTGGTG
CGGCTCGATG CGGACGCCTT CGCGCTCTAC CTCGCACCAT CCGAAGGCAT GACGCTCGAC
TCCACCCTGT CGATCGCCGA CCGCATCCAG CGCGCCCTCA GCGAGCCGCT GGTGCTGCAC
GGGCTCACCG CTTATGTCAG CGCCTCGGTC GGGATTGCGC TTGCCAGCAA ATCACCCGAA
CCGACGGCTG CCAGCCTGCT TGTCGCCGCG GAGCGCGCCA TGGTCGAAGC CCGTTCCCAG
GGGGCCGGTG CCCTGCGGCT GTTCTCGGCC GAGATGCAGA CGGAGATTCG CGCCAGCCAC
GAATTGGCCG AAGATCTGGC CAAGGCACTG GAGAACGGCG AAATCGTTGC CTGGTTCCAG
CCTCAGGTCT CCACTGAAAC CGGGCAGGTC ACGGGCTTCG AGGCGCTGGC TCGGTGGGAC
CACCCCAGCC GCGGCATCGT GTCCCCGGCG GAGTTTCTGC CGGCCATCGA AGCCTCCGGA
CGCACCGAAC GCCTGAGCGA GGTCATGCTC TACCAGGGGC TGAAAGCCCT CGTCGCATGG
GAGCGGGGCG GCTTCGTGAT CCCCTCCATC GGTGTCAATT TCGCGGGGCT CGAGTTGCGC
AATCCCCACC TGATCGACAA GGTGAAATGG GAGCTGGACC GGTTCGGCCT GACGGCAGAT
CGGCTGTCGG TGGAAATCCT CGAGACCGTC ATCACCGAGA CCGATGACGA CATAGTTCTT
CGCAATATCA AGGCGCTGGG GGAGCTTGGC TGCGGCATCG ACCTCGACGA TTTCGGCACC
GGCCATGCCT CCATCAGTGC GATCAAACGC TTCAAGACCA GCCGCATCAA GATCGACCGG
TCCTTCGTCA CCCATATCGA CAAGGATGGG GAGCAGCAGC GCATGGTCGC CGCCATCCTG
ACAATGGCGC AGCAACTCCA GGTGGAGTCG CTGGCCGAAG GTGTCGAGAC CATCGGTGAA
CACTCGATCC TCGCCCAGCT CGGCTGCCAG CACGTACAGG GGTTCGGGAT CGCGCGGCCA
ATGCCCTTCG AGGACACCTT TGCCTGGCTG GCCGAGCATG AGCGCAAACG CGCCCCCACG
CCCCGGATCG AACGCCAACG CGGCGCTTGA
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| Protein sequence | MASARHAARA ARGSGVLVSR FLDFFRSTGK QLFRDPALLA GFIPLFVALS YSTRDIRWLI
GASTLIPFLV LAIRAFDVVT SPKGGRDGLT GLPCRAALLE VLDKYFATPG ASTRTAACMV
IDLDDFHSFN ERWGREAADE VLRQTANRLR SAVRDNDLVV RLDADAFALY LAPSEGMTLD
STLSIADRIQ RALSEPLVLH GLTAYVSASV GIALASKSPE PTAASLLVAA ERAMVEARSQ
GAGALRLFSA EMQTEIRASH ELAEDLAKAL ENGEIVAWFQ PQVSTETGQV TGFEALARWD
HPSRGIVSPA EFLPAIEASG RTERLSEVML YQGLKALVAW ERGGFVIPSI GVNFAGLELR
NPHLIDKVKW ELDRFGLTAD RLSVEILETV ITETDDDIVL RNIKALGELG CGIDLDDFGT
GHASISAIKR FKTSRIKIDR SFVTHIDKDG EQQRMVAAIL TMAQQLQVES LAEGVETIGE
HSILAQLGCQ HVQGFGIARP MPFEDTFAWL AEHERKRAPT PRIERQRGA
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