Gene Dshi_0316 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_0316 
Symbolgph 
ID5711566 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp304561 
End bp305241 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content70% 
IMG OID641266212 
Productphosphoglycolate phosphatase 
Protein accessionYP_001531666 
Protein GI159042872 
COG category[R] General function prediction only 
COG ID[COG0546] Predicted phosphatases 
TIGRFAM ID[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value0.547041 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCTGC GTCTGGTGGT GTTCGACGTG GACGGCACGC TGGTGGACAG CCAGCAGCAG 
ATCCTTGCGG CGATGATCCA GGCGTTCGAG GGGATCGGCC TCGTGCCACC GAAGCCTGCG
GCCATGCGCG CGATCATCGG GCTGTCCTTG CCCGTGGCCA TGGCGCAGCT GGCGCCGGAG
GCCGGGGCGC GGGACCATGA TCGCCTTGCG GAGGGGTACA GGCAGGCCTT CGTGGCCCAG
CGGGCCGCGG GTGGGGCGGA GGCGGATGCG CCGCTCTATC CCGGGGCGCT GGCGGCGTTG
CGGGCGCTGG CCGCGCGGGA CGACACGCTG CTCGGGGTGG CGACCGGCAA ATCCCGCCGG
GGTCTGGAGC ATCTGCTCGA CTGCCACGAT TTGCGGCCCT TTTTCATCAC TTCGCAGGTG
GCGGACGACC ATCCGTCGAA ACCGCATCCC TCGATGCTGT GGCAGGCCAT GGCCGAGACC
GGGGTCGATG CGGCGCAGGC GGTCATGCTG GGCGATACCG GGTTCGACAT GGAGATGGCG
CGCGCCGCCG GGGTCACGCC GCTGGGCGTC GGTTGGGGCT ACCACGCGCC CGCGCGCCTG
CGCGACCATG GCGCGGTTGA AGTCCTGGCG GATTTCGCCG AACTACCCAC CGCGTTGGAG
ACTATCTGGA GGCAGGGATG A
 
Protein sequence
MTLRLVVFDV DGTLVDSQQQ ILAAMIQAFE GIGLVPPKPA AMRAIIGLSL PVAMAQLAPE 
AGARDHDRLA EGYRQAFVAQ RAAGGAEADA PLYPGALAAL RALAARDDTL LGVATGKSRR
GLEHLLDCHD LRPFFITSQV ADDHPSKPHP SMLWQAMAET GVDAAQAVML GDTGFDMEMA
RAAGVTPLGV GWGYHAPARL RDHGAVEVLA DFAELPTALE TIWRQG