Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0316 |
Symbol | gph |
ID | 5711566 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 304561 |
End bp | 305241 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641266212 |
Product | phosphoglycolate phosphatase |
Protein accession | YP_001531666 |
Protein GI | 159042872 |
COG category | [R] General function prediction only |
COG ID | [COG0546] Predicted phosphatases |
TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.547041 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCTGC GTCTGGTGGT GTTCGACGTG GACGGCACGC TGGTGGACAG CCAGCAGCAG ATCCTTGCGG CGATGATCCA GGCGTTCGAG GGGATCGGCC TCGTGCCACC GAAGCCTGCG GCCATGCGCG CGATCATCGG GCTGTCCTTG CCCGTGGCCA TGGCGCAGCT GGCGCCGGAG GCCGGGGCGC GGGACCATGA TCGCCTTGCG GAGGGGTACA GGCAGGCCTT CGTGGCCCAG CGGGCCGCGG GTGGGGCGGA GGCGGATGCG CCGCTCTATC CCGGGGCGCT GGCGGCGTTG CGGGCGCTGG CCGCGCGGGA CGACACGCTG CTCGGGGTGG CGACCGGCAA ATCCCGCCGG GGTCTGGAGC ATCTGCTCGA CTGCCACGAT TTGCGGCCCT TTTTCATCAC TTCGCAGGTG GCGGACGACC ATCCGTCGAA ACCGCATCCC TCGATGCTGT GGCAGGCCAT GGCCGAGACC GGGGTCGATG CGGCGCAGGC GGTCATGCTG GGCGATACCG GGTTCGACAT GGAGATGGCG CGCGCCGCCG GGGTCACGCC GCTGGGCGTC GGTTGGGGCT ACCACGCGCC CGCGCGCCTG CGCGACCATG GCGCGGTTGA AGTCCTGGCG GATTTCGCCG AACTACCCAC CGCGTTGGAG ACTATCTGGA GGCAGGGATG A
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Protein sequence | MTLRLVVFDV DGTLVDSQQQ ILAAMIQAFE GIGLVPPKPA AMRAIIGLSL PVAMAQLAPE AGARDHDRLA EGYRQAFVAQ RAAGGAEADA PLYPGALAAL RALAARDDTL LGVATGKSRR GLEHLLDCHD LRPFFITSQV ADDHPSKPHP SMLWQAMAET GVDAAQAVML GDTGFDMEMA RAAGVTPLGV GWGYHAPARL RDHGAVEVLA DFAELPTALE TIWRQG
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