Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0305 |
Symbol | secY |
ID | 5711555 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 295343 |
End bp | 296704 |
Gene Length | 1362 bp |
Protein Length | 453 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641266201 |
Product | preprotein translocase subunit SecY |
Protein accession | YP_001531655 |
Protein GI | 159042861 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0201] Preprotein translocase subunit SecY |
TIGRFAM ID | [TIGR00967] preprotein translocase, SecY subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.398461 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCATCAG CAGCAGAGCA AATGGCCGCC AACATGAGTT GGTCCGCCCT GGGGAAGGCG ACCGAGCTTC GGCAGCGGAT CTTCTTCACC CTGGGTCTTC TGATCGTCTA CCGGCTGGGC ACCTATATCC CGGTGCCGGG GATCGACGGC GCGCAGCTGC GCGAATTCAT GGACCAGGCG GCCGCGGGTC TCGGCGGCGT TTTGAACATG TTTACCGGCG GTGCGATTTC CCGGATGGGG ATCTTCGCGC TCGGGATCAT GCCGTATATC TCGGCCTCGA TCATCGTGCA GCTGCTGACC GCGATGGTGC CCAAGCTCGA ACAACTCAAG AAAGAGGGCG AGCAGGGGCG CAAGAAGATC AACCAGTACA CGCGCTACGG CACGGTGTTC CTGGCGACCT TCCAGGCCTA CGGGTTGGCG ATCAGCCTTG AATCGGGCGG TCTGGTGACC GATCCGGGCT GGTTCTTCCG GGCGGCCTGC GTGATCACGC TGGTGGGCGG GACGATGTTC CTGATGTGGC TGGGCGAGCA GATCACCCAG CGCGGCATCG GCAACGGCAT TTCGCTGATC ATCTTTGTCG GTATCATCGC CGAGCTGCCC GCGGCGCTGG CGCAGTTCTT CGAGAGCGGC CGGTCCGGCG CGCTGTCGAC CCCGGTGATC CTGGGCGTGA TCCTGATGTT GCTGGCGACG CTGGTCTTCG TGGTGTTCAT GGAGCGCGCT TTGCGCAAGA TCCACATCCA GTATCCGCGC CGCCAGGTGG GCATGAAGAT GTATGACGGC GGGTCTTCGC ACCTGCCGGT TAAGATCAAC CCCGCAGGCG TGATCCCGGC GATCTTTGCC TCTTCGCTGC TGCTCCTGCC GACGACGATC AGTACCTTCT CGGGCGGCAA CTCCGGCCCG ATCATGTCGA CGATCCTGGC CTATTTCGGA CCCGGGCAGC CGCTCTACCT GCTGTTCTTT GCGGGCATGA TCATCTTCTT CACGTATTTC TACACCGCGA ACGTGTCCTT CAAGACCGAA GATGTGGCGG ACAACCTCAA GAACCAGAAC GGCTTCATCC CCGGCATCCG GCCGGGCAAG AAGACCGAGG AATATCTCGA TTACGTGGTC AGCCGCATTC TGGTGGTGGG CTCGGGCTAC CTGGCCTTGG TCTGCCTCAT CCCGGAAATG GTGCGGACCG AACTGGCGAT CACGGCGTAT TTCGGCGGCA CCTCGATCCT GATTATCGTG TCGGTGGGTA TGGACACCGT CCAGCAAATC CAGTCCCATC TGCTCGCGCA TCAATACGAA GGGCTCATCG AGAAGTCCCA GTTGCGCGGC AAGAAACGCG GCAAAGGGAA GAGGAGCCCG GCACGTCGAT GA
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Protein sequence | MASAAEQMAA NMSWSALGKA TELRQRIFFT LGLLIVYRLG TYIPVPGIDG AQLREFMDQA AAGLGGVLNM FTGGAISRMG IFALGIMPYI SASIIVQLLT AMVPKLEQLK KEGEQGRKKI NQYTRYGTVF LATFQAYGLA ISLESGGLVT DPGWFFRAAC VITLVGGTMF LMWLGEQITQ RGIGNGISLI IFVGIIAELP AALAQFFESG RSGALSTPVI LGVILMLLAT LVFVVFMERA LRKIHIQYPR RQVGMKMYDG GSSHLPVKIN PAGVIPAIFA SSLLLLPTTI STFSGGNSGP IMSTILAYFG PGQPLYLLFF AGMIIFFTYF YTANVSFKTE DVADNLKNQN GFIPGIRPGK KTEEYLDYVV SRILVVGSGY LALVCLIPEM VRTELAITAY FGGTSILIIV SVGMDTVQQI QSHLLAHQYE GLIEKSQLRG KKRGKGKRSP ARR
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