| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0277 |
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| Symbol | rplD |
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| ID | 5711527 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 280131 |
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| End bp | 280748 |
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| Gene Length | 618 bp |
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| Protein Length | 205 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641266173 |
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| Product | 50S ribosomal protein L4 |
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| Protein accession | YP_001531627 |
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| Protein GI | 159042833 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0088] Ribosomal protein L4 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.187422 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAACTCG ACGTCATCAA ACTGGACGGC GAAGCGGCCG GCTCGGTCGA GCTGGACGAG
GCCCTGTTCG GGCTGGAGCC GCGTGCGGAT ATCCTGCACC GCGTGGTCCG CTGGCAGCGC
AACAAGGCGC AGGCCGGCAC CCACAAGGTC AAGACCCGCT CGGAAGTCAG CTACTCCACC
AAGAAGATCT ATCGCCAGAA AGGCACCGGC GGCGCACGCC ACGGTGCGCG GTCTGCGCCG
ATCTTCCGCA AGGGTGGTAT CTACAAGGGT CCGACCCCGC GCAGCCACGC CCATGACCTG
CCGAAGAAAT TCCGCAAGCT GGGTCTGAAG CACGCCTTGT CCGCGAAGGC CAAGGCAGGC
GAGCTTGTGG TGATCGACAT GGCGACCTCC GAAGGCAAGA CCGCAACCCT GGCCAAGCAG
ATCAAGAACC TGGGCTGGAA GCGCGCGCTT GTGATCGACG GGGCGCAGGT GGATGCGGGC
TTCGCCAAGG CCGCGGCCAA TATCGACACG CTCGATGTGC TGCCGTCCAT GGGCGCAAAC
GTCTATGACA TCCTCAAGCG CGACACCCTG GTGTTGACGA AGGCGGGTGT CGAAGCACTG
GAGGCACGAC TGAAATGA
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| Protein sequence | MKLDVIKLDG EAAGSVELDE ALFGLEPRAD ILHRVVRWQR NKAQAGTHKV KTRSEVSYST
KKIYRQKGTG GARHGARSAP IFRKGGIYKG PTPRSHAHDL PKKFRKLGLK HALSAKAKAG
ELVVIDMATS EGKTATLAKQ IKNLGWKRAL VIDGAQVDAG FAKAAANIDT LDVLPSMGAN
VYDILKRDTL VLTKAGVEAL EARLK
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