Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0277 |
Symbol | rplD |
ID | 5711527 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 280131 |
End bp | 280748 |
Gene Length | 618 bp |
Protein Length | 205 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641266173 |
Product | 50S ribosomal protein L4 |
Protein accession | YP_001531627 |
Protein GI | 159042833 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0088] Ribosomal protein L4 |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.187422 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAACTCG ACGTCATCAA ACTGGACGGC GAAGCGGCCG GCTCGGTCGA GCTGGACGAG GCCCTGTTCG GGCTGGAGCC GCGTGCGGAT ATCCTGCACC GCGTGGTCCG CTGGCAGCGC AACAAGGCGC AGGCCGGCAC CCACAAGGTC AAGACCCGCT CGGAAGTCAG CTACTCCACC AAGAAGATCT ATCGCCAGAA AGGCACCGGC GGCGCACGCC ACGGTGCGCG GTCTGCGCCG ATCTTCCGCA AGGGTGGTAT CTACAAGGGT CCGACCCCGC GCAGCCACGC CCATGACCTG CCGAAGAAAT TCCGCAAGCT GGGTCTGAAG CACGCCTTGT CCGCGAAGGC CAAGGCAGGC GAGCTTGTGG TGATCGACAT GGCGACCTCC GAAGGCAAGA CCGCAACCCT GGCCAAGCAG ATCAAGAACC TGGGCTGGAA GCGCGCGCTT GTGATCGACG GGGCGCAGGT GGATGCGGGC TTCGCCAAGG CCGCGGCCAA TATCGACACG CTCGATGTGC TGCCGTCCAT GGGCGCAAAC GTCTATGACA TCCTCAAGCG CGACACCCTG GTGTTGACGA AGGCGGGTGT CGAAGCACTG GAGGCACGAC TGAAATGA
|
Protein sequence | MKLDVIKLDG EAAGSVELDE ALFGLEPRAD ILHRVVRWQR NKAQAGTHKV KTRSEVSYST KKIYRQKGTG GARHGARSAP IFRKGGIYKG PTPRSHAHDL PKKFRKLGLK HALSAKAKAG ELVVIDMATS EGKTATLAKQ IKNLGWKRAL VIDGAQVDAG FAKAAANIDT LDVLPSMGAN VYDILKRDTL VLTKAGVEAL EARLK
|
| |