| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0269 |
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| Symbol | rpoC |
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| ID | 5711519 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 269021 |
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| End bp | 273268 |
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| Gene Length | 4248 bp |
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| Protein Length | 1415 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641266165 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001531619 |
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| Protein GI | 159042825 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCAGG AACTGACAAC CAACCCGTTC AACCCGGTCG CCCCGGTCAA GACCTTCGAC
GAGATCAAGG TTTCCCTGGC GAGCCCGGAG CGGATCCTCT CGTGGTCCTT CGGCGAGATC
AAGAAGCCCG AGACGATCAA CTACCGCACG TTCAAGCCCG AGCGTGACGG CCTGTTCTGC
GCGCGGATCT TCGGCCCGAT CAAGGATTAC GAATGCTTGT GCGGCAAGTA CAAGCGGATG
AAATATCGCG GGGTCATCTG CGAGAAATGC GGCGTCGAAG TCACGCTGCA GAAGGTCCGG
CGCGAGCGCA TGGGCCATAT CGAGCTGGCC GCCCCCGTCG CCCATATCTG GTTCCTGAAA
TCGCTGCCGT CGCGGATCGG CACGATGCTG GACATGACCC TGCGTGATCT CGAACGGATC
CTCTATTTCG AGAACTACGT GGTGATCGAG CCGGGCCTGA CGGACCTCAC CTACGGTCAG
CTGATGACCG AGGAGGAGTT CCTCGATGCC CAGGACGCCT ACGGCATGGA CGCCTTCACC
GCCAATATCG GTGCCGAAGC GATCCGCGAG ATGCTGGCGG CGATCGACCT GGAAACCGAG
GCCGAGCAGC TGCGCGCCGA TCTGGCCGAG GCCACGGGCG AGTTGAAGCC CAAGAAGATC
ATCAAGCGCC TGAAGCTGGT CGAGAATTTC CTCGAGTCCG GCAACCGTCC GGAATGGATG
GTTCTGACCG TGGTGCCGGT GATCCCGCCG GAGCTGCGCC CGCTGGTCCC GCTGGACGGG
GGCCGGTTCG CGACCTCGGA CCTCAACGAC CTCTATCGCC GGGTGATCAA CCGCAACAAC
CGCCTCAAGC GGCTCATCGA GCTGCGCGCG CCGGACATCA TCATCCGCAA TGAAAAGCGG
ATGCTGCAGG AATCCGTCGA CGCGCTCTTC GACAACGGCC GTCGCGGCCG GGTGATCACG
GGGGCGAACA AGCGGCCGCT GAAGTCGCTG TCGGACATGC TCAAGGGCAA GCAGGGCCGG
TTCCGTCAGA ACCTGCTCGG CAAGCGCGTG GACTTCTCGG GCCGCTCGGT CATCGTGACC
GGGCCGGAGC TGAAGCTGCA TCAATGCGGT CTGCCCAAGA AAATGGCGCT GGAGCTGTTC
AAGCCGTTCA TCTACTCGCG GCTCGAGGCC AAGGGCCTGA GCAGCACGGT CAAGCAGGCC
AAGAAGCTGG TCGAAAAAGA GCGCCCCGAG GTGTGGGATA TCCTCGACGA GGTGATCCGC
GAACACCCGG TGATGCTGAA CCGCGCACCG ACCCTGCACC GTCTGGGCAT CCAGGCGTTC
GAGCCCGTGC TCATCGAAGG CAAGGCGATC CAGCTGCACC CGCTCGTGTG CTCGGCGTTC
AACGCCGATT TCGACGGCGA CCAGATGGCG GTTCACGTGC CGCTCTCGCT CGAGGCGCAG
CTCGAAGCGC GCGTCCTGAT GATGTCCACG AACAACGTGC TGTCGCCGGC CAACGGCGCG
CCGATCATCG TGCCGTCCCA GGACATGATC CTCGGGCTCT ACTACATCAC GCTGGAGCGT
GAGGGCCTGC CGGGTCAGGG CATGATCTTC GGCTCTCCGG AGGAGGTCGA GCATGCGCTG
ACCGCGGGCA CCGTTCACCT GCACTCCAAG ATCCAGGCGC GGGTCAAGCA GATCGACGAC
GAAGGCAACG AGATCTACAA GCGTTACGAG ACCACGCCCG GGCGCGTGCG CCTCGGCGCG
CTTCTGCCGC TGAACGCCAA GGCGCCGTTC GAACTGGTCA ACCGGCTCCT GCGCAAGAAA
GAGGTGCAGC AGGTCATCGA CACCGTCTAC CGCTATTGCG GGCAAAAGGA GTCGGTCATC
TTCTGCGACC AGATCATGAC GCTCGGCTTC CGGGAGGCGT TCAAGGCGGG CATTTCCTTC
GGCAAGGACG ACATGCTGAT CCCCGACACC AAGTGGGACA TCGTCGAAGG TGTCCGCGAC
CAGGTGAAGG AATTCGAACA GCAATACATG GATGGCCTGA TCACCCAGGG TGAAAAGTAC
AACAAGGTCG TCGATGCGTG GTCGAAATGT TCCGACGAGG TGGCGTCCGA GATGATGGAC
GAGATCTCCC GCGACCGGTT CGATCCCGAC ACCAAGGAGC AGATGGAGCC GAACTCGGTC
TACATGATGG CCCATTCCGG CGCCCGGGGT TCGCCCGCGC AGATGAAGCA GCTCGGCGGG
ATGCGCGGCC TGATGGCCAA GCCGTCGGGC GAGATCATCG AGACTCCGAT CATCTCGAAC
TTCAAGGAAG GCCTGACCGT TCTGGAATAC TTCAACTCCA CCCACGGGGC CCGGAAGGGT
CTGGCGGACA CGGCGTTGAA GACGGCGAAC TCGGGTTATC TGACCCGGCG TCTGGTGGAC
GTGGCCCAGG ACTGCATTGT GCGGCTGAAC GATTGCGGCA CCGAGAACGC CATCACCGCC
GAAGCGGCCG TGAACGACGG GGAGGTTGTC GCCTCCCTCG GTGAACGGGT GCTGGGGCGT
GTGGCGGCCG AGGACGTGGT CGACCCGGCC AGCGGCGAGG TGATCGTCGC CAAGGGCGAG
TTGATCGACG AGCGCAAGGC CGACCTGATC GAGCAGTCCA GCATCCAGTC CATGCGGATG
CGCAGCCCGC TGACCTGCGA GGCGGATGAA GGCGTCTGCG CCCAGTGCTA TGGCCGGGAT
CTGGCGCGCG GCACCAAGGT GAACGTGGGC GAGGCCGTCG GCATCATCGC GGCCCAGTCC
ATCGGCGAGC CGGGCACCCA GCTGACCATG CGGACCTTCC ACATCGGCGG GATCGCACAG
GGTGGCCAGC AGTCCTTCCA GGAGGCCGGG CAGGAGGGCA AGATCGCCTT CCGCAACGCC
AACCTGCTGG AGAACACCTC GGGCGAGAAG ATCGTCATGG GCCGCAACAT GCAGCTCCTG
ATCGTCGACG GGGAGGGCGC GGAGCGGGCC AGCTTCAAGC TCGGCTACGG CACCAAGGTC
CATGTGGCCG AGGGCGACAA GGTAGGCCGC GGCGACAAGC TGTTCGAATG GGATCCCTAC
ACCCTGCCGA TCATCGCCGA GAAGTCGGGG GTGGTGCGGT TTGCGGATCT CGTTTCGGGC
ATCTCGGTGC GCGAAGAGAC CGACGATGCG ACGGGCATGA CCCAGAAGAT CGTGTCCGAC
TGGCGCGCCG CGCCCAAGGG CAGCGACCTC AAGCCCGAGG TTCTGATCGC GGATCCGGAA
ACCGGCGAGC CCGTGCGCAA CGACGCGGGC AACCCGGTGA CCTATCCGAT GTCGGTGGAC
GCGATCCTGT CGATCGAGGA CGGCATGCCG ATCTCGGCCG GCGACGTGGT GGCGCGGATC
CCGCGCGAAG GTGCCAAGAC CAAGGACATC ACCGGGGGTC TTCCCCGCGT GGCGGAACTG
TTCGAGGCCC GTCGTCCCAA GGATCACGCC ATCATCGCCG AGATCGACGG CTATGTCCGG
TTCGGGCGCG ACTACAAGAA CAAGCGTCGC ATCTCGATCG AGCCCAGTGA CGAGACCATG
GAGCCCGTGG AATACATGGT GCCCAAGGGC AAGCACATCC CGGTGGCCGA GGGCGATTTC
GTCCAGAAGG GCGACTACAT CATGGATGGC AACCCCGCGC CGCATGACAT CCTGCGGATC
ATGGGGATCG AGGCGCTGGC GGACTACCTG ATCAACGAGG TGCAGGACGT CTACCGCCTG
CAGGGCGTGA AGATCAACGA CAAGCACATC GAGGTGATCG TGCGCCAGAT GCTCCAGAAG
TGGGAGATCC TCGACAGCGG GGAAACCACG CTTCTGAAGG GCGAGCATGT GGACAAGCTC
CAGTTCGAGG CGGTCAACGA GAAGGCGATC GCCGAAGGTC GTCGTCCGGC CCAGGGCGAG
CCGATCCTCC TGGGGATCAC CAAGGCCTCG CTCCAGACCC GGTCCTTCAT CTCGGCAGCC
TCCTTCCAGG AGACGACCAA GGTGCTGACC GAGGCCTCGA CCATGGGCAA GCGCGACAAG
CTGATCGGCC TGAAGGAAAA CGTCATCGTG GGCCGCCTGA TCCCGGCGGG CACCGGTGGG
GCGACCCAGC AGATGCGCCG CATCGCCCAG GAGCGCGACC AGAAGGTGAT CGAGCAGCGT
CAGGCGGAGG CCGAAGAGGC CGCTGCCCTC GCCGCCCCGA TGGCGGAGGA CGTGTTCGAG
GATGGGGGGG ACATGGCGGA TATCTCCATG CCCGAGAGCC GCGATTGA
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| Protein sequence | MNQELTTNPF NPVAPVKTFD EIKVSLASPE RILSWSFGEI KKPETINYRT FKPERDGLFC
ARIFGPIKDY ECLCGKYKRM KYRGVICEKC GVEVTLQKVR RERMGHIELA APVAHIWFLK
SLPSRIGTML DMTLRDLERI LYFENYVVIE PGLTDLTYGQ LMTEEEFLDA QDAYGMDAFT
ANIGAEAIRE MLAAIDLETE AEQLRADLAE ATGELKPKKI IKRLKLVENF LESGNRPEWM
VLTVVPVIPP ELRPLVPLDG GRFATSDLND LYRRVINRNN RLKRLIELRA PDIIIRNEKR
MLQESVDALF DNGRRGRVIT GANKRPLKSL SDMLKGKQGR FRQNLLGKRV DFSGRSVIVT
GPELKLHQCG LPKKMALELF KPFIYSRLEA KGLSSTVKQA KKLVEKERPE VWDILDEVIR
EHPVMLNRAP TLHRLGIQAF EPVLIEGKAI QLHPLVCSAF NADFDGDQMA VHVPLSLEAQ
LEARVLMMST NNVLSPANGA PIIVPSQDMI LGLYYITLER EGLPGQGMIF GSPEEVEHAL
TAGTVHLHSK IQARVKQIDD EGNEIYKRYE TTPGRVRLGA LLPLNAKAPF ELVNRLLRKK
EVQQVIDTVY RYCGQKESVI FCDQIMTLGF REAFKAGISF GKDDMLIPDT KWDIVEGVRD
QVKEFEQQYM DGLITQGEKY NKVVDAWSKC SDEVASEMMD EISRDRFDPD TKEQMEPNSV
YMMAHSGARG SPAQMKQLGG MRGLMAKPSG EIIETPIISN FKEGLTVLEY FNSTHGARKG
LADTALKTAN SGYLTRRLVD VAQDCIVRLN DCGTENAITA EAAVNDGEVV ASLGERVLGR
VAAEDVVDPA SGEVIVAKGE LIDERKADLI EQSSIQSMRM RSPLTCEADE GVCAQCYGRD
LARGTKVNVG EAVGIIAAQS IGEPGTQLTM RTFHIGGIAQ GGQQSFQEAG QEGKIAFRNA
NLLENTSGEK IVMGRNMQLL IVDGEGAERA SFKLGYGTKV HVAEGDKVGR GDKLFEWDPY
TLPIIAEKSG VVRFADLVSG ISVREETDDA TGMTQKIVSD WRAAPKGSDL KPEVLIADPE
TGEPVRNDAG NPVTYPMSVD AILSIEDGMP ISAGDVVARI PREGAKTKDI TGGLPRVAEL
FEARRPKDHA IIAEIDGYVR FGRDYKNKRR ISIEPSDETM EPVEYMVPKG KHIPVAEGDF
VQKGDYIMDG NPAPHDILRI MGIEALADYL INEVQDVYRL QGVKINDKHI EVIVRQMLQK
WEILDSGETT LLKGEHVDKL QFEAVNEKAI AEGRRPAQGE PILLGITKAS LQTRSFISAA
SFQETTKVLT EASTMGKRDK LIGLKENVIV GRLIPAGTGG ATQQMRRIAQ ERDQKVIEQR
QAEAEEAAAL AAPMAEDVFE DGGDMADISM PESRD
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