| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0261 |
|---|
| Symbol | rplA |
|---|
| ID | 5712187 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 257737 |
|---|
| End bp | 258435 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641266157 |
|---|
| Product | 50S ribosomal protein L1 |
|---|
| Protein accession | YP_001531611 |
|---|
| Protein GI | 159042817 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0081] Ribosomal protein L1 |
|---|
| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAGC TTGGAAAACG CACCCGCGCC GCGCGCGAGG CCGTGGCCGG CAAGTCCGAC
CTGACCGTGG AAGAAGCCGT CGCCCTGATC AAGGCCAACG CGACCTCGAA ATTCGACGAG
ACCGTCGAGA TCGCCATGTG CCTGGGCGTC GACCCGCGCC ATGCGGACCA GATGGTGCGC
GGTGTGGTCA GCCTGCCGAA CGGCACGGGC AAGACCGTGC GCGTGGCTGT CTTCGCCCGT
GGCCCCAAGG CCGAGGAAGC GCAGGCGGCC GGCGCGGATA TCGTGGGCGC CGAGGACCTG
ATGGAGACGA TCCAGTCCGG CAAGATCGAG TTCGACCGCT GCATCGCGAC CCCGGACATG
ATGCCGATCG TCGGACGCCT GGGCAAGATC CTGGGCCCGC GGAACCTGAT GCCGAACCCC
AAGGTCGGCA CCGTGACCAT GGACGTCAAG GCCGCCGTGG AAGCCGCCAA GGGCGGGGAA
GTGCAATTCA AGGCCGAGAA GGCCGGTGTG GTGCATGCCG GCGTCGGCAA GGCCTCTTTC
GACGAGGCCA AGCTGGTCGA GAACGTGCGC GCCTTCGTGG ACGCGGTCTC CAAGGCCAAG
CCGTCGGGTG CCAAGGGGTC CTACATGAAG AAGATCGCGC TCAGCTCCAC CATGGGCCCG
GGCGTGACGG TCGCCGTGGA CAGTGCAACG GGCAACTGA
|
|---|
| Protein sequence | MAKLGKRTRA AREAVAGKSD LTVEEAVALI KANATSKFDE TVEIAMCLGV DPRHADQMVR
GVVSLPNGTG KTVRVAVFAR GPKAEEAQAA GADIVGAEDL METIQSGKIE FDRCIATPDM
MPIVGRLGKI LGPRNLMPNP KVGTVTMDVK AAVEAAKGGE VQFKAEKAGV VHAGVGKASF
DEAKLVENVR AFVDAVSKAK PSGAKGSYMK KIALSSTMGP GVTVAVDSAT GN
|
|---|
| |