| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0188 |
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| Symbol | ispH |
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| ID | 5712113 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 189644 |
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| End bp | 190600 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641266083 |
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| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
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| Protein accession | YP_001531538 |
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| Protein GI | 159042744 |
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| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0761] Penicillin tolerance protein |
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| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.453314 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCTGC CGCCCCTGAC CCTCTATCTC GCCGCGCCCC GCGGGTTCTG CGCGGGCGTG
GACCGGGCCA TCAAGATCGT CGAGATGGCG CTGGAGAAAT GGGGCGCCCC GGTCTACGTG
CGCCACGAGA TCGTGCACAA CAAGTACGTG GTCGACGGGC TGCGCGCCAA GGGGGCGGTC
TTCGTCAAGG AACTTGACGA CTGCCCCGAT GACCGCCCGG TGATCTTCTC GGCCCACGGT
GTGCCCAAGG CGGTCCCGGC AGAGGCCACG CGCCGTGAGA TGGTCTATGT GGACGCCACC
TGTCCGCTCG TGAGCAAGGT CCATATCGAG GCGGAGCGTC ACCACGCGGG CGGGCTGCAG
ATGGTGATGA TCGGCCATGC GGGCCACCCC GAAACCGTGG GCACCATGGG CCAGTTGCCC
GACGGCGAGG TCATCCTGGT GGAAACCGTC GCCGATGTGG CCACGATCAC GCCCCGCGAT
CCCGACAAGC TCGCCTTCAT CACCCAGACC ACCCTGTCGG TGGACGACAC CGCCGATATC
GTCGCCGCCC TGCAGGCGCG CTTCCCCGCC ATCGTAGGCC CGCACAAGGA AGACATCTGC
TACGCCACGA CAAACCGCCA GGGTGCGGTG AAGGCCATGG CGCCCAAGGC CGATGCCATG
CTCGTGATCG GCGCGCCGAA CTCCTCGAAC TCCAAGCGGC TGGTGGAGGT CGGACGCAGC
GCCGGGTGCG CCTATGCCCA ACTGGTCCAG CGCGCCGAGG ATATCGACTG GCGCGCCCTC
GAAGGCATCT CCTCCATCGG CATCACCGCC GGGGCCTCCG CCCCCGAAGT GCTGGTGAAC
GAAGTGATCG AAGCCTTCCG CACCCGGTTC GACCTGACCG TCGAACAGGT CGAGACCGCA
CAGGAAAACG TCGAATTCAA GGTGCCCCGC GTGCTGCGCG AACCTGCCGG GGCCTGA
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| Protein sequence | MSLPPLTLYL AAPRGFCAGV DRAIKIVEMA LEKWGAPVYV RHEIVHNKYV VDGLRAKGAV
FVKELDDCPD DRPVIFSAHG VPKAVPAEAT RREMVYVDAT CPLVSKVHIE AERHHAGGLQ
MVMIGHAGHP ETVGTMGQLP DGEVILVETV ADVATITPRD PDKLAFITQT TLSVDDTADI
VAALQARFPA IVGPHKEDIC YATTNRQGAV KAMAPKADAM LVIGAPNSSN SKRLVEVGRS
AGCAYAQLVQ RAEDIDWRAL EGISSIGITA GASAPEVLVN EVIEAFRTRF DLTVEQVETA
QENVEFKVPR VLREPAGA
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