Gene Dshi_0172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_0172 
SymbolcobH 
ID5711640 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp175166 
End bp176704 
Gene Length1539 bp 
Protein Length512 aa 
Translation table11 
GC content72% 
IMG OID641266067 
Productprecorrin-8X methylmutase 
Protein accessionYP_001531522 
Protein GI159042728 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG2082] Precorrin isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.00890226 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCAGGG CCTTCTGCAG TTACCTAGTC GCGGACTGGT CGGCGAACGG GACGCCCAAA 
ACCGGCAAGG ACAGTATCTG GGTCGCGCTC GTGCAACCCG ATGCGCGCCC CGTGGTCGAA
AACCCGTCCA CCCGCAAGGC TGCCATGGCG CTGATCGAGG AGTTGATCGC CGCCGAGCAG
GAGGCCGGGC GCCGGGTGCT GGCGGGGTTC GACTTTCCCT TCGGGTATCC CGCGGGCTTT
GCCAAAGCCC TCGGCGACGG CGCAGGCTGG CAGGAGGTCT GGGCCCGGAT CGCGGCGGAG
GTGTCGGACG GTCCGGACAA CGCCAATGAC CGTTTCGATG CGGCCGCGCG GCTGAACACC
CTGTTCCCGG GCGCGGGTCC GTTCTGGGGC AACGGGCTCA AGCGCGACAT CCCCGGTCTG
CCGCGCAAGC TGCCCGAGGG CTATGGCACC ACCCTGCCCG CGCGCCTGCG CCACGCCGAG
GCACAGGCCC GCGGTGCGCA GGAGGTCTGG AAGCTCTCGG GCGCGGGCTC CGTGGGGGGG
CAGGCCCTGA TGGGGATCGC GGCACTCGAA GGATTGCGCC ACCGGATCGG GGCCGCTGTC
TGGCCGTTCC AGCCATGGCG CGGGGAGGGC CCGGTCCTGG CCGAGGTGTT CCCGTCCCTG
ACCGACATCC CCCACCTGGC GGGCCGGGTG CGCGACGCGG TGCAGGTCGA AAGCCTCGCG
CGTGGTTTGG TGCTCCTCGA TGCGGAGGGA CGGCTTGCCC CCTTGCTGGA TGCCGCCGAA
CGGCAGCCGG AAGATGTCCG CAGCCATGAG GCCAGCATTC TCGGGCTCGG CTACGAGGCG
CTGCTGGGCC GGGCGGTGAA GTCCGGGCTG GGCGCCATGC GGGCGGCGTC CGGCGCCGGG
ATGCGCCCCT ATGAGCGCGA TCCCAAGGCG ATCTACGCGC AGTCCTTCAA GACCGTGCGG
GCCGAGGCCC GGCTGGACAG GTTCCCCCGC GGGCTCGACC AGGTGGCGGT GCGGCTGATC
CATGCCTGCG GGATGGTGGA TGTGGCGGAT CGGCTGGCCT TCTCCGACGG CGCGTTCGAG
GCCGGGCGCG CCGCCTTGGA GGCGGGCGCG CCGGTGCTGT GCGATTGCGA GATGGTGGGG
GCGGGGATCA TCCGCCGCTA TCTGCCTGCG GGCAACGAGG TGATCGTGAC CCTGAACCGC
GCCGAGGTGC CCGCGCGCGC GCAGGCGATC GGCAATACCC GCTCGGCCGC GGCGGTGGAG
TTGTGGGAGC CGCTGCTGGG CGGTGCGGTG GTGGCCATCG GCAACGCGCC CACGGCGCTC
TTTCACCTGC TGGAGCTGAT CGACGCTGGC GCCCCGAAAC CCGCGCTGAT CCTGGGCTTC
CCGGTGGGGT TTGTCGGCGC CGCCGAGAGC AAGGCGGAAC TTGCGGCCAA CCCGCGGGGC
TGCGATTTCG TGGCCTTGCG CGGCCGGCGC GGCGGCTCGG CCATGGCGTC GGCGGCCGTG
AACGCTTTGG CCGCCGGATT GCCGGAGGTG GAGACATGA
 
Protein sequence
MRRAFCSYLV ADWSANGTPK TGKDSIWVAL VQPDARPVVE NPSTRKAAMA LIEELIAAEQ 
EAGRRVLAGF DFPFGYPAGF AKALGDGAGW QEVWARIAAE VSDGPDNAND RFDAAARLNT
LFPGAGPFWG NGLKRDIPGL PRKLPEGYGT TLPARLRHAE AQARGAQEVW KLSGAGSVGG
QALMGIAALE GLRHRIGAAV WPFQPWRGEG PVLAEVFPSL TDIPHLAGRV RDAVQVESLA
RGLVLLDAEG RLAPLLDAAE RQPEDVRSHE ASILGLGYEA LLGRAVKSGL GAMRAASGAG
MRPYERDPKA IYAQSFKTVR AEARLDRFPR GLDQVAVRLI HACGMVDVAD RLAFSDGAFE
AGRAALEAGA PVLCDCEMVG AGIIRRYLPA GNEVIVTLNR AEVPARAQAI GNTRSAAAVE
LWEPLLGGAV VAIGNAPTAL FHLLELIDAG APKPALILGF PVGFVGAAES KAELAANPRG
CDFVALRGRR GGSAMASAAV NALAAGLPEV ET