| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0165 |
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| Symbol | cobD |
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| ID | 5711633 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 169365 |
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| End bp | 170276 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641266060 |
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| Product | cobalamin biosynthesis protein |
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| Protein accession | YP_001531515 |
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| Protein GI | 159042721 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1270] Cobalamin biosynthesis protein CobD/CbiB |
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| TIGRFAM ID | [TIGR00380] cobalamin biosynthesis protein CobD |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.890938 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACGGAGC ATGCGGCGCT CCTGCTTCTG GCGCTCCTGC TCGATGCGGT CTTCGGGGAG
CCGGATTGGC TCTGGACCCG CCTGCCCCAT CCGGCGGTGC TTATGGGGCG TCTGGTGGCG
GGCGCAGACA AGCGGCTCAA CAAGCACCGT GACCTGCGCT TTCGCGGCAT CCTGGTGATG
ATCGCCCTCG GCCTCGGCGC GCTGGTCCTC GGTGCGGGCC TGGCCGCCCT CGGCCCCGTG
GTCGAGGTGC TGCTTGCCGC GATCCTTCTC GCCCAGCGCA GCCTCGTGGA CCATGTGCGC
GCCGTCGCGA CGGGCCTGAG CGACAGCCTC GCGGCGGGCC GTGCCAAGGT CGCGATGATC
GTGGGGCGGG ATACCGAACC CCTCGATGCC GCCGGGGTTG CCCGCGCCGC CATCGAATCC
GGGGCCGAGA ATTTCTCAGA CGGGGTGCTC GCGCCGGCCT TCTGGTTCCT GATCGGGGGC
CTGCCGGGGC TGCTGCTCTA CAAGATCACC AACACCGCCG ACAGCATGAT CGGTTACCGC
ACCCCGCGCT ACGCGGAATT CGGCTGGGCC GCGGCGCGGT TCGACGACCT GCTGAACTGG
GTGCCCGCGC GGATCAGCGC GCTGGTGATC CTGGTTGCTG CGGGACGTCC CGGCGGCTGG
CCGGTGATCC TGCGCGACGC GCCCCTGCAC CGCTCCCCCA ACGCGGGCTG GCCCGAGGCG
GCCATGGCCG TCAGCCTCGA TGTCGCGCTG TCGGGCCCGC GCAGCTACGA GGGCGCGATC
CGCGACTTTC CCTTCGTGCA TCCCGACGGC ACCCGCACCC CCGGCCCGGC GGAGATCGAG
GCCGCCTGCA CCGCGCTCTG GCGCTCCTGG GGCGCGATGC TGGCCCTGAC CGCCCTGATC
GCCGTGCTCT GA
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| Protein sequence | MTEHAALLLL ALLLDAVFGE PDWLWTRLPH PAVLMGRLVA GADKRLNKHR DLRFRGILVM
IALGLGALVL GAGLAALGPV VEVLLAAILL AQRSLVDHVR AVATGLSDSL AAGRAKVAMI
VGRDTEPLDA AGVARAAIES GAENFSDGVL APAFWFLIGG LPGLLLYKIT NTADSMIGYR
TPRYAEFGWA AARFDDLLNW VPARISALVI LVAAGRPGGW PVILRDAPLH RSPNAGWPEA
AMAVSLDVAL SGPRSYEGAI RDFPFVHPDG TRTPGPAEIE AACTALWRSW GAMLALTALI
AVL
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