| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0150 |
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| Symbol | |
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| ID | 5711618 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 149400 |
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| End bp | 151349 |
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| Gene Length | 1950 bp |
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| Protein Length | 649 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641266045 |
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| Product | putative lytic transglycosylase catalytic |
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| Protein accession | YP_001531500 |
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| Protein GI | 159042706 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.862262 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGGCA AGGCAATTCG AGTTTTCTTC ATGGTGATGG CGGCGGTGGG GCTGGTGGCG
CAGGCCGCGC CGGTCCGCGC CGATCTGGCG GAGGCATTGC AGGCCACGCG CAGCAGCGAC
TGGGACCGCG CCACGCGCGC CGCCGCGGCG CTCGAGGATC AGGCCGCACG CGATGTGGTG
ATCTGGACCC TGCTGCGCGC GCGCCAGGGC AGCTGGCAGG ACTACCGCGA CTTCCTCGCG
CGTAACAGTG ACTGGCCCGG CCTGCCGCTT CTGCGGGCGC GGGGGGAGGA TGCGATCCCC
GAAAATGCCG CCCCGGCCGA CGTGCTGGCC TATTTCGCGC CGCAAGCCCC ACGCACCGGC
ACCGGGGCAC GGCGTCTGGC CGCGGCTCAA GCCGCGACCG GCGATGCCGA GGGCGCGGTG
GAGACCCTGG CGACCGCCTG GCGTCACCTG AACCTGGACC GCGAAGAACA GGCGATCTTC
CTGCGCGAGC ATTTCCGCGA AATCACACCC CAGAACATCG CCCGGCTCGA CCGTCTCCTG
TGGGAGGGGC GCACCGGCGA TGCGCGCGCG ATGCTCGACA GCGTGCCGCC CGCCTGGCAG
CGCCTGGCCG AGGCCCGGAT CGCCCTGCGG ATCGACCAGC CGGGGGTGGA CGGGCTGATC
GCGGCGGTCC CGGCGGCGCT GCAAGACCAT CCGGGCCTCG CCTACGAGCG GTTCCAGTGG
CGCTTGCGCA AGGGCCGGAT CGACTCCGCC CGCGAGTTGC TGGACGCGCA GTCGACCTCT
GCCGCGGCCC TCGGCGATCC CGAGGCCTGG GCCAATCGCC GCCGGTCCCT CGCCCGCGAC
CTGATGCGCG ACGACCGGGA TCGCGAGGCC TACCGCCTGG CCGCCAATCA CTTCCTGACC
GAGGGCAACC ACTATGCCGA TCTGGAATGG CTCTCCGGCT TCATCGCCCT GCGCAAGCTG
AACGATCCCG AAACGGCGCT GGGCCATTTC CGCCGGTTCG AGGACGCTGT GGCCTCGCCG
ATCTCCCTCG GCCGGGCGGG CTACTGGCAA GGCCGTGCGC TGGAGGCGCT GGGTCGGCCG
AACGAGGCCC GCGCCGCCTA TGCGATGGGG GCCGAGCACC AGACCGCCTT CTATGGCCAA
CTCGCCGCCG AACGGGCCGG GATCGCGCCC GACCCCGCGC TAGCCGGGCG CGAGACCTAT
CCCGACTGGG CCGCGAGCCC CTATGCGCGC ACCTCGGTCT TCCGCGCCGC CCGGGCCCTG
CAACAAGCCG GGCAGCGGAG CCTGGCGGAG CGATTCCTGG TGCACCTGAG CGAGCGGCTG
ACGCTGGAGG AAATGGGCGC GCTGGCCGAT GTGGCCCTGG CCTGGGACGA GCCGCATATC
GCCCTCAAGA TCGCGAAATT CGCGGCCGAG GACGGGCGCG TGCTGCACCG GGCCTATCAC
CCGGTGACCA ACCTGGTGCC TGGCCAGGGG CTCGCGGTCA ACCGGGCTCT GGCGCTCGCC
ATCGCCCGGC GAGAGAGCGA GTTCGACCCG GCGGTGGTCA GCCCCGCGGG CGCGCGCGGC
CTGATGCAGC TGATGCCGGG GACGGGCGAG TTGATGGCCG GCAAGCTGGG CGAGCCGTTC
TCGGCGGCGC GACTCCTCAG CGACCCGGCC CAGAACGTGC GCTTCGGTGC CGCCTATCTC
GACCAGCTGA TCGAGGAGTT CGGCGAGAAC CTGACCCTGA TCGCCATCGG CTACAACGCG
GGCCCGGGCC GGTCGCGCAG TTGGACGGAA CGTTTCGGCA GCCCCAAGGG GCTCGATGAG
GACGCGATGG TGGACTGGAT CGAACACGTG CCGTTTCGCG AGACCCGGAA CTACATCATG
CGCGTGACCG AAAGCCGGGT GATCTACGAG ATGCGCCTGA CCGGACGCGC GCAACCCTTC
CGCGTGATCG AGCGCCTGAC CGCCCGCTGA
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| Protein sequence | MAGKAIRVFF MVMAAVGLVA QAAPVRADLA EALQATRSSD WDRATRAAAA LEDQAARDVV
IWTLLRARQG SWQDYRDFLA RNSDWPGLPL LRARGEDAIP ENAAPADVLA YFAPQAPRTG
TGARRLAAAQ AATGDAEGAV ETLATAWRHL NLDREEQAIF LREHFREITP QNIARLDRLL
WEGRTGDARA MLDSVPPAWQ RLAEARIALR IDQPGVDGLI AAVPAALQDH PGLAYERFQW
RLRKGRIDSA RELLDAQSTS AAALGDPEAW ANRRRSLARD LMRDDRDREA YRLAANHFLT
EGNHYADLEW LSGFIALRKL NDPETALGHF RRFEDAVASP ISLGRAGYWQ GRALEALGRP
NEARAAYAMG AEHQTAFYGQ LAAERAGIAP DPALAGRETY PDWAASPYAR TSVFRAARAL
QQAGQRSLAE RFLVHLSERL TLEEMGALAD VALAWDEPHI ALKIAKFAAE DGRVLHRAYH
PVTNLVPGQG LAVNRALALA IARRESEFDP AVVSPAGARG LMQLMPGTGE LMAGKLGEPF
SAARLLSDPA QNVRFGAAYL DQLIEEFGEN LTLIAIGYNA GPGRSRSWTE RFGSPKGLDE
DAMVDWIEHV PFRETRNYIM RVTESRVIYE MRLTGRAQPF RVIERLTAR
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