Gene Dshi_0142 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_0142 
SymbolmrcB 
ID5711610 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp140693 
End bp142882 
Gene Length2190 bp 
Protein Length729 aa 
Translation table11 
GC content68% 
IMG OID641266037 
Productpenicillin-binding protein 
Protein accessionYP_001531492 
Protein GI159042698 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones50 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTGCGCG CCGATGCGAG GTCTGCCGGA CATCCGGCCA AGGCCCGGAC AGCCGCGGCC 
AAGGCCCCGG CTAAACCCAA GCCCAAGCCG CGCCGCAAGA CCGCAGCCAA GCGCCGGAGC
TCTGCTCGGT CCGGCCCGCC GCGGGGCCTG TTCGGGCGGC TGTTCTGGGC AATCCGGCGG
CTGATCGGCT GGATCCTCGG GCTGATCTTC GCCATCACCT GGCGCGGGAT CGCGGTACTG
TTGCTGATCC TCGCGGGGTC GGTGGCCTAC CATTACTCCA CCCTGCCGCC GGCGTTGCAG
CTGACCGATG GGCGGGTGCG GGGGTCCGTG ACGCTGCTGG ACCGGGACGG AGATGTCTAT
GCCTGGCGCG GGGACCAGTT CGGCGGTGTG ATCGACGCCA ACACCGTGTC GCCGCATCTG
AAAAACGCGA TCATCGCCAC GGAGGACCGG CGGTTCTACC AGCATTTCGG CATCAGCCCG
CGCGGCATCG CCAGCGCGGT ACGGATCAAC CTGCGCGAGG GGCGCGGGCC GTTGTCGGGT
CATGGCGGCT CCACTATCAC GCAGCAGGTG GCCAAGCTGC TGTGCCTTGG GACGCCTTAC
AAGCCCGAGA GCGGCATGAC CGAGGCGGAG TATGAGGCCG ACTGCCGCCG GGGCGGGATC
TGGCGCAAGG TCAAGGAAGT GCCCTATTCG CTGGCGCTTG AGGCGGCCTA TACCAAGGAT
GAGATCCTGA CGATCTATCT CAACCGGGCC TATCTGGGCG CTGGCGCGCG CGGGTTCGAG
GCCGCGAGCC AGCGGTATTT CGGCAAGTCC GCGGCCGAAG TGGATCCGGC GGAGGCGGCG
ATGCTGGCGG GGCTTTTGGT GGCGCCGTCG CGCTTTGCGC CGACCAACGA CCTGGAGCGG
TCCCAGAGGC GCGCGGCCAC GATCCTGCGG CTGATGGAGC AGGAGGGCTA CCTGAGTGCG
ACAGATGCCG CGGTGGCCCG GGCCAATCCT GCCACCCTGT CGGAAGCAGC CGAGCGGCGC
GCGGGCGGGT ACTTCGCCGA TTGGGTGATG GAGGAAGGGC CGAATTTCCT GACCTCGGAG
ACCACCGAGG ACGTGATCAT CCGCACCACC TTCGATCAGG ATATCCAGGC GGCGGCGGAA
GAGGCGCTGA AATACGTGTT CGAGACCAAG GTCAGCCCCG GCTCCAAGGC TCAGGCGGCA
ATCGTGGTGA TGTCGGCGGA CGGGGCGGTC CGGGCCATGG TGGGCGGGCG CAAGCTGCAG
GTGTCCGGCG CGTTCAACCG GGCGACGCAG GCGCTGCGGC AGACCGGGTC GGCCTTCAAG
CCCTTTGTCT ATGCCGCAGC ACTCGACCTG GGCTACAGAC CGAACGACAT GATCCTCGAT
GCGCCGCTGA CCATCGATAT CCCCGGTTCA GGCCCTTGGA GCCCGCGCAA TTACACCAAC
AATTTCTACG GCGAGGTGAC ACTAACCGAG GCGCTGAAGA ACTCGCTCAA CACGCCCGCG
GTGCGCCTGT CGGAGCAGGT CGGGCGGGAG AATGTGCGCA AGGTGGCCAG CGATTTCGGC
ATCGCGCGAG AGATGGCGCC GGGACCGGCG CTGGCGCTGG GGGCGTCGGA GAGCACGTTG
CTGGAGATGA CAGCGGCCTA TGCCGGGATC CTGAACGGCG GCAGCAGCGT GGCGCCCTAC
GGGCTGACGG AGTTGCGGCT TCTGGGGGAT TCCGAGCCGC TGATGGGCCA GGCGGGCGGG
ATCGGCGAAC GGGTGGTCAG CCAGCGCGCG GCGCAGGAGC TGACCTTCAT GATGTTCCAG
GTGATCGAGA CCGGCACCGG CGGGCGCGCC AAGCTGCCCG ACGGACGGCA GGCGGCAGGC
AAGACCGGCA CCACCCAGGC CGCGCGGGAT GCGTGGTTCG TGGGCTTCAC CGCCGATTAC
GTGGCGGGGA TCTGGATGGG CTATGACGAT AACACGCCCC TGACGGGCGT GACCGGCGGC
GGGCTGCCGG CGGAGATCTG GCGCGAAACC ATGCGCCGGG TCCACGAGGG CGACCCGCAA
AGACCCCTGC CCATGACCCT GCCGCCCCCC CGGGTGGAAC CGGCGCCACA GATCGCCCGG
CAAGAGCGGC CGCAGATTGA AGACCAGATC CGCAACGCCG CCGAACGGGT GCTGCGCGAT
GTGCTTGGTG GGTTGCTGGG GCGGAACTGA
 
Protein sequence
MLRADARSAG HPAKARTAAA KAPAKPKPKP RRKTAAKRRS SARSGPPRGL FGRLFWAIRR 
LIGWILGLIF AITWRGIAVL LLILAGSVAY HYSTLPPALQ LTDGRVRGSV TLLDRDGDVY
AWRGDQFGGV IDANTVSPHL KNAIIATEDR RFYQHFGISP RGIASAVRIN LREGRGPLSG
HGGSTITQQV AKLLCLGTPY KPESGMTEAE YEADCRRGGI WRKVKEVPYS LALEAAYTKD
EILTIYLNRA YLGAGARGFE AASQRYFGKS AAEVDPAEAA MLAGLLVAPS RFAPTNDLER
SQRRAATILR LMEQEGYLSA TDAAVARANP ATLSEAAERR AGGYFADWVM EEGPNFLTSE
TTEDVIIRTT FDQDIQAAAE EALKYVFETK VSPGSKAQAA IVVMSADGAV RAMVGGRKLQ
VSGAFNRATQ ALRQTGSAFK PFVYAAALDL GYRPNDMILD APLTIDIPGS GPWSPRNYTN
NFYGEVTLTE ALKNSLNTPA VRLSEQVGRE NVRKVASDFG IAREMAPGPA LALGASESTL
LEMTAAYAGI LNGGSSVAPY GLTELRLLGD SEPLMGQAGG IGERVVSQRA AQELTFMMFQ
VIETGTGGRA KLPDGRQAAG KTGTTQAARD AWFVGFTADY VAGIWMGYDD NTPLTGVTGG
GLPAEIWRET MRRVHEGDPQ RPLPMTLPPP RVEPAPQIAR QERPQIEDQI RNAAERVLRD
VLGGLLGRN