Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0142 |
Symbol | mrcB |
ID | 5711610 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 140693 |
End bp | 142882 |
Gene Length | 2190 bp |
Protein Length | 729 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641266037 |
Product | penicillin-binding protein |
Protein accession | YP_001531492 |
Protein GI | 159042698 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 50 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGCTGCGCG CCGATGCGAG GTCTGCCGGA CATCCGGCCA AGGCCCGGAC AGCCGCGGCC AAGGCCCCGG CTAAACCCAA GCCCAAGCCG CGCCGCAAGA CCGCAGCCAA GCGCCGGAGC TCTGCTCGGT CCGGCCCGCC GCGGGGCCTG TTCGGGCGGC TGTTCTGGGC AATCCGGCGG CTGATCGGCT GGATCCTCGG GCTGATCTTC GCCATCACCT GGCGCGGGAT CGCGGTACTG TTGCTGATCC TCGCGGGGTC GGTGGCCTAC CATTACTCCA CCCTGCCGCC GGCGTTGCAG CTGACCGATG GGCGGGTGCG GGGGTCCGTG ACGCTGCTGG ACCGGGACGG AGATGTCTAT GCCTGGCGCG GGGACCAGTT CGGCGGTGTG ATCGACGCCA ACACCGTGTC GCCGCATCTG AAAAACGCGA TCATCGCCAC GGAGGACCGG CGGTTCTACC AGCATTTCGG CATCAGCCCG CGCGGCATCG CCAGCGCGGT ACGGATCAAC CTGCGCGAGG GGCGCGGGCC GTTGTCGGGT CATGGCGGCT CCACTATCAC GCAGCAGGTG GCCAAGCTGC TGTGCCTTGG GACGCCTTAC AAGCCCGAGA GCGGCATGAC CGAGGCGGAG TATGAGGCCG ACTGCCGCCG GGGCGGGATC TGGCGCAAGG TCAAGGAAGT GCCCTATTCG CTGGCGCTTG AGGCGGCCTA TACCAAGGAT GAGATCCTGA CGATCTATCT CAACCGGGCC TATCTGGGCG CTGGCGCGCG CGGGTTCGAG GCCGCGAGCC AGCGGTATTT CGGCAAGTCC GCGGCCGAAG TGGATCCGGC GGAGGCGGCG ATGCTGGCGG GGCTTTTGGT GGCGCCGTCG CGCTTTGCGC CGACCAACGA CCTGGAGCGG TCCCAGAGGC GCGCGGCCAC GATCCTGCGG CTGATGGAGC AGGAGGGCTA CCTGAGTGCG ACAGATGCCG CGGTGGCCCG GGCCAATCCT GCCACCCTGT CGGAAGCAGC CGAGCGGCGC GCGGGCGGGT ACTTCGCCGA TTGGGTGATG GAGGAAGGGC CGAATTTCCT GACCTCGGAG ACCACCGAGG ACGTGATCAT CCGCACCACC TTCGATCAGG ATATCCAGGC GGCGGCGGAA GAGGCGCTGA AATACGTGTT CGAGACCAAG GTCAGCCCCG GCTCCAAGGC TCAGGCGGCA ATCGTGGTGA TGTCGGCGGA CGGGGCGGTC CGGGCCATGG TGGGCGGGCG CAAGCTGCAG GTGTCCGGCG CGTTCAACCG GGCGACGCAG GCGCTGCGGC AGACCGGGTC GGCCTTCAAG CCCTTTGTCT ATGCCGCAGC ACTCGACCTG GGCTACAGAC CGAACGACAT GATCCTCGAT GCGCCGCTGA CCATCGATAT CCCCGGTTCA GGCCCTTGGA GCCCGCGCAA TTACACCAAC AATTTCTACG GCGAGGTGAC ACTAACCGAG GCGCTGAAGA ACTCGCTCAA CACGCCCGCG GTGCGCCTGT CGGAGCAGGT CGGGCGGGAG AATGTGCGCA AGGTGGCCAG CGATTTCGGC ATCGCGCGAG AGATGGCGCC GGGACCGGCG CTGGCGCTGG GGGCGTCGGA GAGCACGTTG CTGGAGATGA CAGCGGCCTA TGCCGGGATC CTGAACGGCG GCAGCAGCGT GGCGCCCTAC GGGCTGACGG AGTTGCGGCT TCTGGGGGAT TCCGAGCCGC TGATGGGCCA GGCGGGCGGG ATCGGCGAAC GGGTGGTCAG CCAGCGCGCG GCGCAGGAGC TGACCTTCAT GATGTTCCAG GTGATCGAGA CCGGCACCGG CGGGCGCGCC AAGCTGCCCG ACGGACGGCA GGCGGCAGGC AAGACCGGCA CCACCCAGGC CGCGCGGGAT GCGTGGTTCG TGGGCTTCAC CGCCGATTAC GTGGCGGGGA TCTGGATGGG CTATGACGAT AACACGCCCC TGACGGGCGT GACCGGCGGC GGGCTGCCGG CGGAGATCTG GCGCGAAACC ATGCGCCGGG TCCACGAGGG CGACCCGCAA AGACCCCTGC CCATGACCCT GCCGCCCCCC CGGGTGGAAC CGGCGCCACA GATCGCCCGG CAAGAGCGGC CGCAGATTGA AGACCAGATC CGCAACGCCG CCGAACGGGT GCTGCGCGAT GTGCTTGGTG GGTTGCTGGG GCGGAACTGA
|
Protein sequence | MLRADARSAG HPAKARTAAA KAPAKPKPKP RRKTAAKRRS SARSGPPRGL FGRLFWAIRR LIGWILGLIF AITWRGIAVL LLILAGSVAY HYSTLPPALQ LTDGRVRGSV TLLDRDGDVY AWRGDQFGGV IDANTVSPHL KNAIIATEDR RFYQHFGISP RGIASAVRIN LREGRGPLSG HGGSTITQQV AKLLCLGTPY KPESGMTEAE YEADCRRGGI WRKVKEVPYS LALEAAYTKD EILTIYLNRA YLGAGARGFE AASQRYFGKS AAEVDPAEAA MLAGLLVAPS RFAPTNDLER SQRRAATILR LMEQEGYLSA TDAAVARANP ATLSEAAERR AGGYFADWVM EEGPNFLTSE TTEDVIIRTT FDQDIQAAAE EALKYVFETK VSPGSKAQAA IVVMSADGAV RAMVGGRKLQ VSGAFNRATQ ALRQTGSAFK PFVYAAALDL GYRPNDMILD APLTIDIPGS GPWSPRNYTN NFYGEVTLTE ALKNSLNTPA VRLSEQVGRE NVRKVASDFG IAREMAPGPA LALGASESTL LEMTAAYAGI LNGGSSVAPY GLTELRLLGD SEPLMGQAGG IGERVVSQRA AQELTFMMFQ VIETGTGGRA KLPDGRQAAG KTGTTQAARD AWFVGFTADY VAGIWMGYDD NTPLTGVTGG GLPAEIWRET MRRVHEGDPQ RPLPMTLPPP RVEPAPQIAR QERPQIEDQI RNAAERVLRD VLGGLLGRN
|
| |