| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0129 |
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| Symbol | ilvD1 |
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| ID | 5711752 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 126918 |
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| End bp | 128651 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641266024 |
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| Product | dihydroxy-acid dehydratase |
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| Protein accession | YP_001531479 |
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| Protein GI | 159042685 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
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| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
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| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.256521 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCAAGC GTTCGTTCGA CAAGTCCAAG CTGCCCAGCC GTCACGTCAC CGAAGGCCCT
TCGCGCGCGC CGCATCGGTC CTATTACTAT GCCATGGGCA TGACCGAGGA AGAGATCCAC
CAGCCGCTGG TCGGGGTCGC CACATGCTGG AACGAGGCCG CGCCCTGCAA CATCGCGCTC
AGCCGCCAGG CCCAGGCGGT GAAGATGGGG GTCAAGCAGG CCTCCGGCAC GCCACGAGAA
TTCACCACGA TCACCGTGAC CGACGGGATC GCCATGGGCC ACGAGGGCAT GCGGTCCTCG
CTGGCCTCCC GCGAGGCGAT TGCCGATACG GTCGAATTGA CCATGCGCGG CCATTGCTAT
GACGCGATTG TGGGTCTGGC GGGCTGCGAC AAGTCCCTGC CGGGGATGAT GATGGCCATG
GTGCGGCTCA ACGTGCCGTC GGTTTTCATT TATGGCGGCT CGATCCTGCC GGGTCGGTTG
AACGGCGAGG ACGTGACGGT TCAGGACGTG TTCGAGGCCG TGGGCAAGCA CCAGGCCGGG
AACTACACCG ATGCAGAGCT GGAAGTGCTG GAGCGGGTGG CTTGTCCGTC CGCAGGGGCC
TGTGGCGGTC AGTTCACCGC CAATACCATG GCCTGCGTGT CCGAGGCGAT CGGTCTGGCG
CTGCCGAATT CCGCGGGCGC ACCCGCGCCC TACGAGAGCC GCGACCAGTA TGGCGAGGCG
TCGGGCCGCG CGGTCATGGA CCTGATCGAG AAAGGCATCC GCGCGCGGGA CATCGTGACC
CGGAAGTCGC TGGAGAATGC CGCGCGGATC GTGGCCTGCA CCGGCGGGTC GACGAATGCC
GGTCTGCACC TGCCTGCGAT TGCCCATGAG GCCGGGATCG AATTCACCTT GCAGGATGTC
TGCGACATCT TCCGAGACAC GCCCTATTTC GTGGACCTCA AGCCGGGCGG CAAATACGTT
GCCAAGGACA TGTACGAAGC GGGCGGCGTG CCCGTGGTGA TGCGCGAGCT GCGCCGCGCG
GGCCTGATCC ACGAGGATTG CATGACCGTG ACCGGCTATT CCATCGGCGA GGAGCTCGAC
AAGGTCACGC TCGAAGCCGA TGGCCGGGTG ATCTATCCGG TCGACACGCC GCTCTCGACC
ACGGGCGGGG TTGTCGGTCT CGAGGGTAAC CTGGCGCCCG AAGGTGCCAT CGTGAAGATC
GCGGGCATGA GCGACGACCA GTTGGTCTTC ACCGGCCCGG CGCGCGTGTT CGAATGCGAA
GAGGACGCCT TCGAGGCGGT TCAGAACCGC GCTTACGCGG AAGGCGACGT CTTCGTGATC
CGCAACGAGG GTCCCGCAGG CGGTCCCGGC ATGCGCGAGA TGCTGGCCAC CACGGCGGCG
CTCTCGGGTC AGGGCATGGG CAAGAAGGTG GCGCTGATCA CCGATGGCCG GTTCTCCGGG
GCCACGCGCG GCTTCTGCGT CGGCCATGTG GGCCCCGAAG CGGCCCATGG CGGCCCCATC
GCGATGCTCA AGGACGGCGA CATGATCACC ATCGACGCGC TGAAGGGCGA GCTGTCCGTC
GCGCTGAGCG AGGATGAGCT TGCCGCGCGA AAAGATGCCT GGAGCGGCCC GCGGGAGACG
ATCTATGCCT CGGGTGCGTT GTGGAAATAT GCGCAGCTGG TTGGCGGCGC ACGCCTGGGG
GCAGTCACCC ATCCCGGAGC CAAGGATGAA AAACACATCT ACGCCGATCT CTGA
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| Protein sequence | MLKRSFDKSK LPSRHVTEGP SRAPHRSYYY AMGMTEEEIH QPLVGVATCW NEAAPCNIAL
SRQAQAVKMG VKQASGTPRE FTTITVTDGI AMGHEGMRSS LASREAIADT VELTMRGHCY
DAIVGLAGCD KSLPGMMMAM VRLNVPSVFI YGGSILPGRL NGEDVTVQDV FEAVGKHQAG
NYTDAELEVL ERVACPSAGA CGGQFTANTM ACVSEAIGLA LPNSAGAPAP YESRDQYGEA
SGRAVMDLIE KGIRARDIVT RKSLENAARI VACTGGSTNA GLHLPAIAHE AGIEFTLQDV
CDIFRDTPYF VDLKPGGKYV AKDMYEAGGV PVVMRELRRA GLIHEDCMTV TGYSIGEELD
KVTLEADGRV IYPVDTPLST TGGVVGLEGN LAPEGAIVKI AGMSDDQLVF TGPARVFECE
EDAFEAVQNR AYAEGDVFVI RNEGPAGGPG MREMLATTAA LSGQGMGKKV ALITDGRFSG
ATRGFCVGHV GPEAAHGGPI AMLKDGDMIT IDALKGELSV ALSEDELAAR KDAWSGPRET
IYASGALWKY AQLVGGARLG AVTHPGAKDE KHIYADL
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