| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0125 |
|---|
| Symbol | fadH |
|---|
| ID | 5711748 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 122863 |
|---|
| End bp | 124881 |
|---|
| Gene Length | 2019 bp |
|---|
| Protein Length | 672 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641266020 |
|---|
| Product | NADPH:2,4-dienoyl-CoA reductase |
|---|
| Protein accession | YP_001531475 |
|---|
| Protein GI | 159042681 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1251] NAD(P)H-nitrite reductase
[COG1902] NADH:flavin oxidoreductases, Old Yellow Enzyme family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCT ATCCGAACCT GCTGCGCCCG TTGGAGCTTG GCCATACGAC CCTGCGCAAC
CGGGTGTTGA TGGGGTCCAT GCATACCGGG CTGGAAGAGA CGCGGGATTG GAACCGGGTG
GCCGAGTTCT ATGCCGCCCG GGCGCGGGGC GGCGCGGCGC TGATGGTCAC TGGCGGCATG
GCACCGAACC CGGAAGGCGG CGTGTTTCCG GGTGCCGCGG GGCTCTATAC GCCGGAGGAC
ATCGCCAATC ATCGGGTGGT GACGGACCGG GTTCATGACG CGGACGGCAA GATCGCGATG
CAGATCCTGC ATGCGGGGCG ATATGCCTAC AGCCCCGATT GCGTTGCGCC CTCGGCGGTG
AAATCCCCGA TTTCGCCCTT CGCACCACGC GAACTGGACG AGGCTGGCAT CGAAAAGCAG
ATCGCCGATA TCGTCACTGC GGCCGCCCGG GCGCGCGAAG CCGGCTATGA CGGGGTGGAG
GTGATGGGAT CTGAGGGATA TTTCCTCAAT CAGTTTCTCG TCACCCACAC CAACCGGCGC
GAGGACCGTT GGGGCGGGCC CTACGAGAAC CGGATGCGCC TGCCGGTGGA AGTCGTCCGG
AGGGTACGCG CGGCGGTGGG CGACGATTTC ATCGTGATCT ACCGGCTGAG CATGATCGAC
CTGATCCCGA ACGGGTCCAC CTGGGACGAG GTGGTGCAAC TAGCCCACGC GATTGAGGGC
GCGGGCGCGT CGATCCTGAA CACCGGGATC GGCTGGCACG AGGCGCGGAT CCCGACCATC
GCCACTTCGG TGCCGCGCAA GGCGTTTGCC TGGGTGACGC GCAAGCTGAT GGGCGAGGTC
GGCATCCCCG TGATCACCTC GAATCGGATC AACACGCCGG AAATCGCGGA AGAGGTACTT
GCCGAGGGTT GCGCCGACAT GGTGTCGATG GCGCGACCCT TCCTCGCGGA TCCGGATTTC
GTGGCCAAGG CCGCAGCCGG GCGCGCGGCG ACCATCGCGC CCTGCATCGC CTGCAACCAG
GCCTGCCTCG ATCATACGTT TTCCGGCAAG CTCAGTTCCT GCCTGGTGAA CCCGCGCGCC
TGCCACGAGA CCGAGCTGCG CTATGAACCG ACCGAGACCC CGCGCCGGAT CGCCGTTGTG
GGCGCCGGTC CCGGCGGGCT GTCGGCGGCC CTGGTCGCGG CGGAGCGGGG CCATGCGGTC
ACGCTTTTTG ACCGGGCGGA CCGGATCGGC GGACAGCTCA ACATGGCGCG CCAGATCCCC
GGCAAGGAGG AATTCCACGG CCTCGTGGAC TGGTACGAGA CCATGGTGGC CGAGCGCGGC
ATTGCCTTGC GCCTGAACAC GGACGCCACA CCCGAGACCG TCGCGGGCTT CGACGAGGTG
ATCGTCGCCA CGGGTGTGCT GCCCCGTGAC CCTGGCATCC CCGGGCAGGA CGCCCCCAAC
GTGCTGTCCT ATATCGACGT GTTGCGCCGC AAGGCACCGG TCGGAGACCG AGTGGCAATC
GTCGGCGCCG GGGGCATCGG CTTCGACGTG GCGGAATACC TGGCCCATGA AGGCGAGAGC
CCGACCGAGG TTCCCGAGCT TTGGCGCCGG GAGTGGGGCG TCGCGGACCC CGAGGACATT
CGCGGCGGCC TCGCCGCCGA GGGGCCGCAA CCCACTCCGA GCCCCCGACA GATCACCCTG
CTGCAACGCA AGGCAGAGAA ACTCGGCAAG CGACTGGGCA AGACCACGGG CTGGATCCAC
CGCGCCAGTT TGCAGATGAA GGGTGTCAGG ATGCTCGGCG GGGTGCAGTA CGAAGGGATC
GGTCCGGAGG GACTGCGCAT CCTGCGGGAC GGAACCCCGG AAACCCTGGA GGTGGACACC
ATCGTGCTCT GCGCCGGGCA GGTGCCTGAA CGCAGCCTCG CCGATGCACT GAGCGCGCGC
GGTGTTCCAG TCCACGTGAT CGGCGGCGCG GATGTGGCCT CCGAACTCGA TGCGAAACGG
GCCATCGACC AGGGCGCGAG GCTGGCGGCG GCACTCTGA
|
|---|
| Protein sequence | MTAYPNLLRP LELGHTTLRN RVLMGSMHTG LEETRDWNRV AEFYAARARG GAALMVTGGM
APNPEGGVFP GAAGLYTPED IANHRVVTDR VHDADGKIAM QILHAGRYAY SPDCVAPSAV
KSPISPFAPR ELDEAGIEKQ IADIVTAAAR AREAGYDGVE VMGSEGYFLN QFLVTHTNRR
EDRWGGPYEN RMRLPVEVVR RVRAAVGDDF IVIYRLSMID LIPNGSTWDE VVQLAHAIEG
AGASILNTGI GWHEARIPTI ATSVPRKAFA WVTRKLMGEV GIPVITSNRI NTPEIAEEVL
AEGCADMVSM ARPFLADPDF VAKAAAGRAA TIAPCIACNQ ACLDHTFSGK LSSCLVNPRA
CHETELRYEP TETPRRIAVV GAGPGGLSAA LVAAERGHAV TLFDRADRIG GQLNMARQIP
GKEEFHGLVD WYETMVAERG IALRLNTDAT PETVAGFDEV IVATGVLPRD PGIPGQDAPN
VLSYIDVLRR KAPVGDRVAI VGAGGIGFDV AEYLAHEGES PTEVPELWRR EWGVADPEDI
RGGLAAEGPQ PTPSPRQITL LQRKAEKLGK RLGKTTGWIH RASLQMKGVR MLGGVQYEGI
GPEGLRILRD GTPETLEVDT IVLCAGQVPE RSLADALSAR GVPVHVIGGA DVASELDAKR
AIDQGARLAA AL
|
|---|
| |