| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0116 |
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| Symbol | |
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| ID | 5711739 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 114678 |
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| End bp | 115730 |
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| Gene Length | 1053 bp |
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| Protein Length | 350 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641266011 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_001531466 |
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| Protein GI | 159042672 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTTCC TCTCAAAGAC CGCGGCACTG ACCATGCTGG CCGTGTCGGC CACATCCCTG
CCCAGCCTTG CGCAGGAGGT CACGCTCCGC TTCCAGCACT TCGTCTCGCC TCTCAGCGCG
AATCCCACCT ATTTCATGGA ACCCTGGGCG CGGAAGATCG AGGCCGACAG CAACGGTCGG
ATCAAGGTGG AACTCTACCC GTTCATGCAA CTCGGCGGCA AAGCCCCGAA CATGTACGAC
CTAATCCGCG ATGGCGCGGT GGATGGCGGT TGGGTGATCC CCGGCTACCA GCCCGGCCGC
TTCCCCGAGG CCGAGGCGCT GGAACTGCCC TTCATGACGA CCAAGACGGG GGAGGACGCC
TCCAAGGCGG CCTGGGTCTA TACCCAGAAG CACCTGATGG ACGATTTCGC CGACGTGAAA
GTGATCGCCG CCCACATGCA CGGGCGTGGC CTCGTGCACA AGAAAGGCCC CGCGATTGCG
GAACTGAGCG ATTTCGAGGG CCTGAAGCTG CGCGGACCGT CTCGTCCAGC GACCCTGCTG
CTGCGCGAGA TGGGCGCAAC CCCGGTCGGC ATGGCCGTGC CCGCATTCCC CGAGGCGTTG
TCCCGCGGCG TGGTCGATGG TGGCGTGATC ACATGGGAAA TGTCGCCCTC CCTCAAGCTC
GACGAGCTGA CCGACAGCCA TACAGACGTG GCGGGCGACA AGAGCCTCTA CAACCTTTTC
TTCCTCTGGG CGATGAACAA GGCGAAGTAT GACAGCCTGC CTGACGACCT GAAGGCCGTG
ATCGACGCCA ATTCCGGTTT CGCCGCCTCG GCCTGGGCTG GGCGCGCCCA TGACACCGGA
GACGCCGAAG GTAAGCAGGC CATGGCCGAT GCCGGCAACG AGATCGCCAC CATGTCCGAG
GAGTTGACCG CCGAGATCGT CACTCTCGGC GAGGCCGTAA CCGAAACCTG GATCGCTGAG
ATGACCGACA AGGGGCTTGA TGGTGCAGGG CTCGTTGCTG ATGCGCGCGC GGCTGTGCAA
GTGACCCGTT CCGACAACCA ACCGCTCAAC TAA
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| Protein sequence | MTFLSKTAAL TMLAVSATSL PSLAQEVTLR FQHFVSPLSA NPTYFMEPWA RKIEADSNGR
IKVELYPFMQ LGGKAPNMYD LIRDGAVDGG WVIPGYQPGR FPEAEALELP FMTTKTGEDA
SKAAWVYTQK HLMDDFADVK VIAAHMHGRG LVHKKGPAIA ELSDFEGLKL RGPSRPATLL
LREMGATPVG MAVPAFPEAL SRGVVDGGVI TWEMSPSLKL DELTDSHTDV AGDKSLYNLF
FLWAMNKAKY DSLPDDLKAV IDANSGFAAS AWAGRAHDTG DAEGKQAMAD AGNEIATMSE
ELTAEIVTLG EAVTETWIAE MTDKGLDGAG LVADARAAVQ VTRSDNQPLN
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