Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0109 |
Symbol | |
ID | 5711732 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 108100 |
End bp | 109035 |
Gene Length | 936 bp |
Protein Length | 311 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641266004 |
Product | auxin efflux carrier |
Protein accession | YP_001531459 |
Protein GI | 159042665 |
COG category | [R] General function prediction only |
COG ID | [COG0679] Predicted permeases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 41 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 47 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTGGCGA TTTTTCTTCA GACCCTGCCG TTCTTTGCCA TCATCGCGTT GGGCTATGGG GCGGGACGGA CCAATTTCTT CTCGCCGGAG GCGACGGCCT ATCTGACCAA GTTCGTGTTC TATTTCGCGC TCTCGGCGAT GCTGTTCCGG TTTGCGGCGA ACCTCACGTT GTCGGACATT CTCGATTGGC AGTTCGTCTG GGCCTATCTC TGGGCCACGG GCGTGATCTA TCTGCTCGCC ACGGCGGTGG CGCTGATCCG CAAGCTCAAT GTTTCGGAGG CCGCGGTGGA GGCGCAATGC GCGGTGATCG GCAATGTGGG ATTCCTCGGC ATTCCGATGC TGGTGCTGCT TCTGGGCGAG GCGGCGGTGG GGCCGGTGAT GTTGGTGCTG ACCGTGGACC TGATCGTGTT CGGCAGCCTG ATCGTGATCC TGATCACGGG ATCGCGGGAC GGGCGGGTCT CTCTCGGTGT GCTGCAATCG GTGGGGCTCG GCCTGCTGAA GAACCCGATG ATCGTGTCGA TCTCGCTTGG CCTGGCCTGG TCGGCATTGC GCCTGCCGAT CCCCGGGCCG ATGAACGCGT TTCTCGACAT CATCGGGTCG GCCGCCACGC CCGGGGCGCT GTTCGCGATC GGCGCATCGC TGGCCACGAA ATCCGCCGAG AGGCTGGAGG TCGCGGGTTG GCTGTCTTTC TGCAAGCTGG TGCTACATCC GGCGGCGGTT GCCCTGGCCG CGCTGGTGAT CTTCCCGGTA GAGGATGCCT ATGCCGCCGG GGTGATGATT GCCGCTGCTG CCCTGCCCAC CGCCGGGAAT GTCTATATCC TGGCCCAGCA TTACGGGGTC GCGCCAGCCC GGGTGTCGGC GACGATCCTC GTGTCCACGG CCCTGAGCAT CCTGACCCTG TCGGCGGTGA TTGCCTGGGT GGGGCCTATG GGCTGA
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Protein sequence | MVAIFLQTLP FFAIIALGYG AGRTNFFSPE ATAYLTKFVF YFALSAMLFR FAANLTLSDI LDWQFVWAYL WATGVIYLLA TAVALIRKLN VSEAAVEAQC AVIGNVGFLG IPMLVLLLGE AAVGPVMLVL TVDLIVFGSL IVILITGSRD GRVSLGVLQS VGLGLLKNPM IVSISLGLAW SALRLPIPGP MNAFLDIIGS AATPGALFAI GASLATKSAE RLEVAGWLSF CKLVLHPAAV ALAALVIFPV EDAYAAGVMI AAAALPTAGN VYILAQHYGV APARVSATIL VSTALSILTL SAVIAWVGPM G
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