Gene Dshi_0109 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_0109 
Symbol 
ID5711732 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp108100 
End bp109035 
Gene Length936 bp 
Protein Length311 aa 
Translation table11 
GC content64% 
IMG OID641266004 
Productauxin efflux carrier 
Protein accessionYP_001531459 
Protein GI159042665 
COG category[R] General function prediction only 
COG ID[COG0679] Predicted permeases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones47 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTGGCGA TTTTTCTTCA GACCCTGCCG TTCTTTGCCA TCATCGCGTT GGGCTATGGG 
GCGGGACGGA CCAATTTCTT CTCGCCGGAG GCGACGGCCT ATCTGACCAA GTTCGTGTTC
TATTTCGCGC TCTCGGCGAT GCTGTTCCGG TTTGCGGCGA ACCTCACGTT GTCGGACATT
CTCGATTGGC AGTTCGTCTG GGCCTATCTC TGGGCCACGG GCGTGATCTA TCTGCTCGCC
ACGGCGGTGG CGCTGATCCG CAAGCTCAAT GTTTCGGAGG CCGCGGTGGA GGCGCAATGC
GCGGTGATCG GCAATGTGGG ATTCCTCGGC ATTCCGATGC TGGTGCTGCT TCTGGGCGAG
GCGGCGGTGG GGCCGGTGAT GTTGGTGCTG ACCGTGGACC TGATCGTGTT CGGCAGCCTG
ATCGTGATCC TGATCACGGG ATCGCGGGAC GGGCGGGTCT CTCTCGGTGT GCTGCAATCG
GTGGGGCTCG GCCTGCTGAA GAACCCGATG ATCGTGTCGA TCTCGCTTGG CCTGGCCTGG
TCGGCATTGC GCCTGCCGAT CCCCGGGCCG ATGAACGCGT TTCTCGACAT CATCGGGTCG
GCCGCCACGC CCGGGGCGCT GTTCGCGATC GGCGCATCGC TGGCCACGAA ATCCGCCGAG
AGGCTGGAGG TCGCGGGTTG GCTGTCTTTC TGCAAGCTGG TGCTACATCC GGCGGCGGTT
GCCCTGGCCG CGCTGGTGAT CTTCCCGGTA GAGGATGCCT ATGCCGCCGG GGTGATGATT
GCCGCTGCTG CCCTGCCCAC CGCCGGGAAT GTCTATATCC TGGCCCAGCA TTACGGGGTC
GCGCCAGCCC GGGTGTCGGC GACGATCCTC GTGTCCACGG CCCTGAGCAT CCTGACCCTG
TCGGCGGTGA TTGCCTGGGT GGGGCCTATG GGCTGA
 
Protein sequence
MVAIFLQTLP FFAIIALGYG AGRTNFFSPE ATAYLTKFVF YFALSAMLFR FAANLTLSDI 
LDWQFVWAYL WATGVIYLLA TAVALIRKLN VSEAAVEAQC AVIGNVGFLG IPMLVLLLGE
AAVGPVMLVL TVDLIVFGSL IVILITGSRD GRVSLGVLQS VGLGLLKNPM IVSISLGLAW
SALRLPIPGP MNAFLDIIGS AATPGALFAI GASLATKSAE RLEVAGWLSF CKLVLHPAAV
ALAALVIFPV EDAYAAGVMI AAAALPTAGN VYILAQHYGV APARVSATIL VSTALSILTL
SAVIAWVGPM G