Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0100 |
Symbol | |
ID | 5711723 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 96999 |
End bp | 98882 |
Gene Length | 1884 bp |
Protein Length | 627 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641265995 |
Product | putative transposase |
Protein accession | YP_001531450 |
Protein GI | 159042656 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.733769 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCGTCGGG AAGACATTCC GTTGGAGCCC TATAAAAATT CGTATCTGGT AGCGGTTCAG GACCTTCCCG ACTGTCTCCG TTTTAGCCTT TTGAATGCTG AGCTGGAGCA CTTGCATCTT TCCCCTGGCA CTTACGACGC GGCGGCGCAT GAGGCGTTTT TTGAGGCGTC GCCGTCGCGG CGGGACCGGG CGGAGCGGCG GGCGGCGGTG GCGCGGGTGC TGGTGGCGTT GGGGCCGGGC GTGCGCTGGT CGGACCGGCT GCGGATCGTG CATGAGAAGT TCGGCGCGAA AGGGCTCTCA AAGCCCTGTT TGAGGGAGAT TTTACGCCGC GTCGAAGGGA TCGATCCGAT CAACTTCGCG CCCGCGCTGC TGGACGAGTA CAAGGGGACG ACCAAACGGG CCGAGTTCAC TGATGAAGCC TGGCGGTTCT TCCTGACACA GATCCGGGAC GCGGCTCCGG AATGGCCGCT TGCAGAAGCC TGGCGGCGCA CGCGCGACGC GGGCCGCGAG CTGGGCTGGA AAGTGCCTCC CTACATCACC GTCTACAGGC GGTGGATGGA GCTGAGCGAG GTGCAGAAAC TGCACGCCCG CCAAGGGACC GCAGAGACCG CGAAAAACCT GTCCATCCCG GTTCAGCGAG ACAAGACAAG CCTGTTGGCG CTGGACGTGG TGTCGCTCGA CGGTCGCGAA ATCGATGTGT TCGTGGACTG GGGCGACGGA AAAGCCGTGC GCCCGGTCAT GCTGGTGCTG GTCGATGTCA GCTCAAACGC GGTTCTCGAC TTCGAGCTTG CCCCGTCGGA GAACGCAACA GCCACCGTGC GGCTGATCAA GCGAGCCTGC GCAAACCATG GAATATTCGA CAAGCTCTAT ACCGATAACG GTTCGGCCTT TGCCGGGCAC AAGGTGGCGG GCGGGACGCC GCATCGCTTT CGCAATGGCG TCGCGAAGGG CGTCCAGCCG ATGGGAATTT GCGAGGTCCT GGGGATCGAT GTGCAGTTTG CCCTGCCGGG TAATGCGCAG GCGAAGATCG CCGAGCGTCT CTACGCGATC ATGTCGCGCT CGGACGACGA CGGGCCAGAC TTCAAGGGTG CGCATACCGG TCACAAACCG GGTGCCCGAC CCAATTCGGA GACCAATCCT ATCCCGGTCG ATGAATGCAA GGCACTGCTG GCCCGTGGCG TCAGACGTCT CAATCGCGAG GAAGGACGTC GGAACCAGGG CGCGCAAGGC CGCTCATACG ATCAGGTGCT GCGCGACGGG CTCACGAAGC GCGCGGAGCT TGGGCGTCCG GTACGGTATC CGACTAAGGA CCAGCTCTAT CGCGCCGGTT TGATCTGGAC GCCTGCGACG GTCGATAGAA ACACGCAGAT CAAGGTCGAT CACTGGACCT ATGGCGGGCC GGAAACGCAA GAGGCCTTGG CACCCTACCG GCGCGGCGGC GCGAAGAACC TCAAGGGCGG AACGAAGATC CTCCTGGCCC GTGACCCAGA CGATCTGAGC GCACCGGCAA TCGCTTATGA TGCGGAGCGA AATTTCATCT GCGACCAGAT CGAGCCGGTC AGGCGTGGGG ATTACAACAG CTCCGATGGC ATTCGGGAGG CAGCGCGCAA CCGGAAGGCC GCAAGGGATG CGGCGCGCAA GGCCGAGGAG GCAAACGCCT ACCTGGAGGA TGCGGAATAT CTCCGAGCCA AGGCCGCCCT GGACGCCGCC TCACGGGAGG ACGACATGCC GCCGCCCGCG CCGGGGAAGG TGGTGGGCGC GCGTTTCGGC GGGCCGCTCA AAGCCGCCAA GCCGAAGCCT GAAACCGATA ACGAAGCTGA AGTTTTGAAG CAATTCGACC GCGTCACCGG GTTCGATCCG GTGCGGGTCC TAAGGGGCCA GTGA
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Protein sequence | MRREDIPLEP YKNSYLVAVQ DLPDCLRFSL LNAELEHLHL SPGTYDAAAH EAFFEASPSR RDRAERRAAV ARVLVALGPG VRWSDRLRIV HEKFGAKGLS KPCLREILRR VEGIDPINFA PALLDEYKGT TKRAEFTDEA WRFFLTQIRD AAPEWPLAEA WRRTRDAGRE LGWKVPPYIT VYRRWMELSE VQKLHARQGT AETAKNLSIP VQRDKTSLLA LDVVSLDGRE IDVFVDWGDG KAVRPVMLVL VDVSSNAVLD FELAPSENAT ATVRLIKRAC ANHGIFDKLY TDNGSAFAGH KVAGGTPHRF RNGVAKGVQP MGICEVLGID VQFALPGNAQ AKIAERLYAI MSRSDDDGPD FKGAHTGHKP GARPNSETNP IPVDECKALL ARGVRRLNRE EGRRNQGAQG RSYDQVLRDG LTKRAELGRP VRYPTKDQLY RAGLIWTPAT VDRNTQIKVD HWTYGGPETQ EALAPYRRGG AKNLKGGTKI LLARDPDDLS APAIAYDAER NFICDQIEPV RRGDYNSSDG IREAARNRKA ARDAARKAEE ANAYLEDAEY LRAKAALDAA SREDDMPPPA PGKVVGARFG GPLKAAKPKP ETDNEAEVLK QFDRVTGFDP VRVLRGQ
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