Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0091 |
Symbol | prc |
ID | 5711714 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 89783 |
End bp | 91120 |
Gene Length | 1338 bp |
Protein Length | 445 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641265986 |
Product | carboxyl-terminal protease |
Protein accession | YP_001531441 |
Protein GI | 159042647 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0793] Periplasmic protease |
TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc) |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0132582 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.640744 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAAT TCGTGATGGC CGCACTGGGC GGCACAGTGG CAGGCGCCCT GCTGACAACC CAAGTCGCAG GGCCACTGCT GGCACAGGAC AACGCGCGCA ACACCTCGGT CTACGAGCAG CTTGACCTGT TCGGGGACAT CTTCGAGCGC ATCCGCGCGC AATATGTCGA ACAGGTGGAT GAAGGCGAGT TGATCGAGGC TGCGATCAAC GGGATGCTCA CCTCGCTCGA CCCCCATTCC AGCTATCTCG CGCCGAAGGA TTTCGGCGAC ATGCAGGTGC AGACCAGAGG CGAGTTCGGC GGACTGGGGA TCGAGGTCAC CCAGGAAGAC GGGTTCGTGA AGGTCGTCTC GCCCATCGAT GACACGCCGG CGGCCGAGGC AGGGATCGAG GCGGGCGATT TCATCACCCA TGTGGACGGC GAGAGCGTAC TTGGCCTGAC CCTGGACGCT GCGGTCACCA TGATGCGGGG CCCGGTGGGC TCCGAAATTG TGATCACCGT GGTGCGCGAG GGCTTCGACG AGCCCTTCGA CGTCACCATC ACCCGCGACA CCATCAAGCT CACCGCCGTG CGCAGCCGGG TCGTCCGCGA CACGGTGGTC ATGCGGATCA CCACCTTCAA CGACCAGACC TTCCCGAACC TCGAAGAGAA GATGGCCGAA GAGGTGGCCG AATTGGGCGG GATGGAAGCT GTCAGCGGTT TCGTGATCGA TCTGCGCAAC AACCCCGGTG GCTTGTTGAC CCAGGCGATC AAGGTCTCCG ACGCGTTTCT CGACAAGGGG GAAATCGTCT CCACCCGCGG CCGCGATCCT CAGGACGGGG AGCGGTTCAA TGCAACCCCG GGTGACCTCG CCGAAGGCAA GCCGATCGTC GTGCTGATCA ATGGCGGCTC GGCCTCGGCC TCGGAAATCG TGGCAGGCGC GCTGCAGGAT CATCGCCGCG CCATCGTCGT CGGCACCAAG AGCTTCGGCA AGGGGTCGGT GCAGTCGGTC GTGCCGCTGC GGGGGGATGG TGCCATGCGT CTGACGACGG CGCGCTACTA CACGCCCTCT GGCCGGTCGA TCCAGTCGCT CGGCGTGTCA CCGGATATTG TGGTCGCGCA ACCGCCCCGG CGCGTGGAGG CTGAGGAGGA CGAGGAGGCG AACAACCGCC CGCGCCGGTC CGAAGCGGAT CTGCGCGGCG CTCTGGACAA CGATTCGATC TCGGAGGCCG AGCGTGAGCA GCTTCTCAAG GAGCGGCAAA AGGCCGAAGA TGCCGCCGAG TTGCGCGAAG AGGATTACCA GCTTGCCTAC GCCATCGACA TCCTCAAGGG GCTGAACGCG CTGGGGCCGA CCGACTGA
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Protein sequence | MKKFVMAALG GTVAGALLTT QVAGPLLAQD NARNTSVYEQ LDLFGDIFER IRAQYVEQVD EGELIEAAIN GMLTSLDPHS SYLAPKDFGD MQVQTRGEFG GLGIEVTQED GFVKVVSPID DTPAAEAGIE AGDFITHVDG ESVLGLTLDA AVTMMRGPVG SEIVITVVRE GFDEPFDVTI TRDTIKLTAV RSRVVRDTVV MRITTFNDQT FPNLEEKMAE EVAELGGMEA VSGFVIDLRN NPGGLLTQAI KVSDAFLDKG EIVSTRGRDP QDGERFNATP GDLAEGKPIV VLINGGSASA SEIVAGALQD HRRAIVVGTK SFGKGSVQSV VPLRGDGAMR LTTARYYTPS GRSIQSLGVS PDIVVAQPPR RVEAEEDEEA NNRPRRSEAD LRGALDNDSI SEAEREQLLK ERQKAEDAAE LREEDYQLAY AIDILKGLNA LGPTD
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