Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0085 |
Symbol | ipmi1 |
ID | 5711708 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 83697 |
End bp | 85100 |
Gene Length | 1404 bp |
Protein Length | 467 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641265980 |
Product | isopropylmalate isomerase large subunit |
Protein accession | YP_001531435 |
Protein GI | 159042641 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0065] 3-isopropylmalate dehydratase large subunit |
TIGRFAM ID | [TIGR00170] 3-isopropylmalate dehydratase, large subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.362256 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.223362 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGCCC GCACGCTTTA CGACAAGATC TGGGATGCGC ACCTGGCCCA TGAGGCCGAG GATGGCACCT GCCTGCTCTA TATCGACCGC CATCTGGTCC ACGAGGTAAC CAGCCCGCAA GCCTTCGAAG GTCTGCGCAT GGCGGGCCGC ACCGTCCGCG CGCCGGACAA GACCATCGCC GTGCCGGACC ACAACGTGCC CACGACGCTT GGCCGCGAGA ACCCCGACCA GATGACCGAG GACAGCCGCA TTCAGGTCGA AGCCCTCGAC AAGAACGCCA AGGATTTCGG GATCCATTAC TACCCGGTTT CCGACATCCG CCAGGGCATC GTCCATATCG TGGGGCCCGA GCAAGGTTGG ACCCTGCCGG GCATGACCGT GGTCTGCGGT GACAGCCACA CCGCCACCCA CGGCGCGTTC GGCGCGCTGG CGCACGGTAT CGGCACGTCG GAGGTCGAGC ATGTGCTGGC CACCCAGACC CTGATCCAGA AGAAATCCAA GAACATGAAG GTGGAGATCA CGGGCAAGCT GCGCCCCGGC GTGACCGCCA AGGATATCAC CCTCTCGGTG ATCGGCGCCA CGGGCACCGC GGGCGGCACC GGCTACGTGA TCGAGTATTG CGGCGAGGCC ATTCGCGACC TGTCCATGGA AGGCCGCATG ACCGTCTGCA ACATGGCAAT CGAAGGGGGT GCACGTGCGG GCCTGATCGC GCCGGACGAG AAGACCTATG AATACGTGCA GGGCCGCCCC CATGCGCCGA AGGGCGCACA GTGGGAGGCC GCGCTGGCCT GGTGGAAGAC CCTCTATTCC GACGACGACG CCCATTGGGA CAAGGTCGTC ACCATCAAGG GCGAGGATAT CGCCCCCGTG GTCACCTGGG GCACCTCCCC CGAAGACGTG CTACCGATCA GTGCCATGGT GCCCGCGCCG GAGGATTTCA CCGGCGGCAA GGTCGACGCG GCCCGGCGCT CGCTCGACTA CATGGGCCTG ACCCCGGGCA CGCCGCTGAG CGAGATCGAG ATCGACACGG TCTTCATCGG CTCCTGCACC AATGGCCGGA TCGAAGACCT GCGCGCCGCC GCGGAAATCC TGAAGGGCAA GAAGATCGCC GTGAAGCGGG CGATGGTGGT GCCAGGCTCC GGTCTTGTCC GCGCCCAGGC CGAGGAAGAA GGCCTTGCCG ACATCTTCAA GCAGGCCGGG TTCGAATGGC GCATGGCGGG CTGTTCCATG TGCCTGGCCA TGAACCCCGA CCAGCTGAGC GAAGGCGAGC GCTGTGCCTC TACCTCGAAC CGCAATTTCG AGGGGCGGCA GGGCTACAAG GGGCGGACGC ATCTCGTCTC GCCCGCCATG GCCGCCGCCG CCGCGGTCAC CGGCAAGCTC ACGGACGTGC GGGACCTGAT GTAA
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Protein sequence | MTARTLYDKI WDAHLAHEAE DGTCLLYIDR HLVHEVTSPQ AFEGLRMAGR TVRAPDKTIA VPDHNVPTTL GRENPDQMTE DSRIQVEALD KNAKDFGIHY YPVSDIRQGI VHIVGPEQGW TLPGMTVVCG DSHTATHGAF GALAHGIGTS EVEHVLATQT LIQKKSKNMK VEITGKLRPG VTAKDITLSV IGATGTAGGT GYVIEYCGEA IRDLSMEGRM TVCNMAIEGG ARAGLIAPDE KTYEYVQGRP HAPKGAQWEA ALAWWKTLYS DDDAHWDKVV TIKGEDIAPV VTWGTSPEDV LPISAMVPAP EDFTGGKVDA ARRSLDYMGL TPGTPLSEIE IDTVFIGSCT NGRIEDLRAA AEILKGKKIA VKRAMVVPGS GLVRAQAEEE GLADIFKQAG FEWRMAGCSM CLAMNPDQLS EGERCASTSN RNFEGRQGYK GRTHLVSPAM AAAAAVTGKL TDVRDLM
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