| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0071 |
|---|
| Symbol | ggt1 |
|---|
| ID | 5711693 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 71093 |
|---|
| End bp | 72676 |
|---|
| Gene Length | 1584 bp |
|---|
| Protein Length | 527 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641265965 |
|---|
| Product | gamma-glutamyltransferase |
|---|
| Protein accession | YP_001531421 |
|---|
| Protein GI | 159042627 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0405] Gamma-glutamyltransferase |
|---|
| TIGRFAM ID | [TIGR00066] gamma-glutamyltranspeptidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.00177118 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGAGATT TTCACTTACC CGGACGGTCC GCCGTCTTTG CCAGCAACGC CATGTGCGCG
ACGTCCCACC CGCTCGCCGC CAAGGTCGCT CTCGACATCC TGCGCGACGG CGGCAACGCG
CTCGACGCCG CCATCGCCGG CGCGGTTCTG CTGGGCCTGT GCGAACCCCA GATGACCGGG
ATCGGCGGCG ACTGCTTTGC CCTGATCAAA CCCGCGGGCA GCGAAGACGT CTTGGGCCTC
AACGGCTCCG GCAAGGCCCC TGCGGCCCTG GACCCGGCGG CCCTGCGCGC CGCGGGCCAC
ACCACCATGC CGCCCGCGGC GGCGGCCTCG GTCACGGTGC CGGGGGCTGT CGACGCCTTT
TGCCACATGT CAGAGCGCTG GGGCCGCGCC GGACTCGACG CGATCCTTGC GCCCGCCATC
CACTATGCCG AACAGGGTAT TCCAGTCGCG CCCCGCGTTG CCTTCGACTG GGCCACCGAT
TCCGCCCGCC TGAACGGCAC CGCCCGCGAC CATTACCTTA TAGCCGGCAA ACCGCCCGTG
GCCGGGGCCA TGTTCCGTGC CCCGCGGCAA GCGGAGGTGC TGCGCAAGAT CGCCCGCGAG
GGCCGTGACG GCTTCTACAC CGGCGCGGTG GCCGAGGACA TGGTCGCCAG CCTGCGCGCC
GCGGGGGGTA CCCACACACG CGACGACTTC GCCGCAACCG CCTGCATGGA CGCCACGCCC
ATCCGCGGCG ACTACAAGGG CTCCGAACTG GTGGAACTGC CGCCCAACAG CCACGGCGCG
ACCGCGATCC TGATGGCCAA TATCCTCGCC CGGTTCGACC TGCCCGCACT CGATCCCTTC
GGCGCCGCCC GCGCGCACCT GGAGGCCGAA GCCGCCAAGC TCGCCTATGA CGCGCGCAAC
CGCTTCGTCG CAGACCCGGA CCACACCACG CGGCTCGACC ACATGTTGCG CCCCGAGACC
GCCGATGCGC TCGCCGCCCT GATCGATCCC AAGCGGGCCA TGGCCGATCC CGCCGCCCTG
TCGGAACACG TCCACCGCGA GACGATCTTC ATCACCGTGG TCGACGCGGA CCGCATGGCC
GTGTCGCTGA TCTACTCGAT CTTCGACGGG TTCGGCTCCG GCATCGCCAG CGACCGCTAC
GGCATCCTGT TCCACAACCG CGGCGCAGGG TTCAACCTCA CGCCCGGCCA CCCGAACGAG
GCAGGCGGCG GCAAGCGCCC CATGCACACC ATCATCCCCG CCATGCTGCG CCGGAACGAC
CGGCTGGTCA TGCCCTTCGG TGTCATGGGC GGCCCCTACC AGGCCAACGG CCATGCGCGC
GTCCTGACCA ATCTCGTCGA TTACGGGCTG CACCCGCAGG CCAATCTCGA CGCCCCGCGC
AGCTTCCATG ACCCGCGCTA TGGCCTTCAG GTGGAGCGGG GCTATTCCGA CGCGGTCCGC
GCCGAGCTGT CGGCCATGGG CCATGAGGTC ATTGTGCCGG ACACGCCCAT CGGCGGCGCC
CAGGCGATCT GGATCGACCC GGAAACCGGC GTTCTGCAAG GCGCCTCCGA CCCCCGCAAG
GACGGCTGTG CCCTCGGCTA CTGA
|
|---|
| Protein sequence | MRDFHLPGRS AVFASNAMCA TSHPLAAKVA LDILRDGGNA LDAAIAGAVL LGLCEPQMTG
IGGDCFALIK PAGSEDVLGL NGSGKAPAAL DPAALRAAGH TTMPPAAAAS VTVPGAVDAF
CHMSERWGRA GLDAILAPAI HYAEQGIPVA PRVAFDWATD SARLNGTARD HYLIAGKPPV
AGAMFRAPRQ AEVLRKIARE GRDGFYTGAV AEDMVASLRA AGGTHTRDDF AATACMDATP
IRGDYKGSEL VELPPNSHGA TAILMANILA RFDLPALDPF GAARAHLEAE AAKLAYDARN
RFVADPDHTT RLDHMLRPET ADALAALIDP KRAMADPAAL SEHVHRETIF ITVVDADRMA
VSLIYSIFDG FGSGIASDRY GILFHNRGAG FNLTPGHPNE AGGGKRPMHT IIPAMLRRND
RLVMPFGVMG GPYQANGHAR VLTNLVDYGL HPQANLDAPR SFHDPRYGLQ VERGYSDAVR
AELSAMGHEV IVPDTPIGGA QAIWIDPETG VLQGASDPRK DGCALGY
|
|---|
| |