| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0062 |
|---|
| Symbol | ubiH |
|---|
| ID | 5711684 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 62385 |
|---|
| End bp | 63650 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641265956 |
|---|
| Product | 2-octaprenyl-6-methoxyphenol hydroxylase |
|---|
| Protein accession | YP_001531412 |
|---|
| Protein GI | 159042618 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0654] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01988] Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.441254 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.00000948983 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGACAACG CCCTCACGCA GGGCATATCC AAGAGTATGG CGGATTTTGA CAGTGATATC
CTGATCGTGG GCGGCGGGCT GAACGGCCCG ACCCTGGCCC TGGCCCTGGC GCAGGCGGGT
TTGCGCAGCA CCGTGATCGA TGCGCATAGC GTGGATCGGC GCGCGGACCC GGCCTTCGAC
GGGCGCAGCT ATGCCCTGGC GCTGGCGTCG CAGCGGATGC TGGCGGCGCT GGGCCTTTGG
GACGGGTTGG AGGAGCGCGC GCAGCCGATG CTGCGGATCA AGGTGTCGGA CGGGCGGCCC
GGCGAGGGGG CCGCGCCCTG GTGGATGCAG TTCGACCATG CCGAGATCGA AGAGGGTCCC
ATGGGGTTCA TGGTCGAGGA CCGCTACCTG CGTCGCGCGC TTCTGGCCGC GATGGAGGAG
TGCGCCGAGA TTGCTCATCT GAGCGAGACG ATCGTGATCG GCCAGCAGGT CGATGCGGAC
GGCGTGATCG TGACCCTCGC GGATGGCACG AGCCGGCGCG GCCGGCTGCT GGTGGGCTGT
GACGGACGCG CCAGCGGGAC CGCGCGGCGG GCCGGGATCG GGCGCACGGG CTGGGGCTAT
GACCAGACGG CGTTGGTTTG CGCCGTGTCC CACGAATTGC CCCATGAGGG GACCGCGCAT
CAGTTCTTCA TGCCCGGAGG GCCGCTGGCG ATCCTGCCGC TGCCGGGCAA CCGCAGCTCG
ATCGTGTGGT CCGAGCGGAC GGCGCAGGCC GAACGCTTCG CCGCTCTGGA CGATGCCGCG
TTTCTGGAGG CGCTGCGGCC GCGGTTCGGG GATTTCCTGG GCGAGATCGC TCTGGTCGGC
GCGCGCTTCA CCTATCCGCT GAGCCTGACG CTGGCCAACG CGATGGTGGC GGATCGGCTG
GCGCTGGTCG GAGACGCGGC CCATGGCGTG CATCCGATTG CCGGGCAGGG TCTGAACCTC
GGGTTCCGGG ATGTGGGCGC GCTGGCCGAG GTGCTGGCGG ATGCGGCGCG GCGGGGCGAG
GATATCGCGG CGCGGGATGT GCTGGACCGC TATGCGCGCT GGCGGCGGTT CGATACGGCG
ACGCTGGCGG TGGCGACCGA TGCGGTGAAC CGGCTCTTTT CCAACGACAA CCCGCTACTG
CGGCTGGGAC GGGACCTGGG CATGGGGCTG GTCAATGCCC TGCCCGGCGC GCGCCGGACC
TTCATCCGCG AGGCGGCTGG TCTGACCGGG GATGTGCCAC GGCTGCTGCA GGGGCGGCCG
GTCTGA
|
|---|
| Protein sequence | MDNALTQGIS KSMADFDSDI LIVGGGLNGP TLALALAQAG LRSTVIDAHS VDRRADPAFD
GRSYALALAS QRMLAALGLW DGLEERAQPM LRIKVSDGRP GEGAAPWWMQ FDHAEIEEGP
MGFMVEDRYL RRALLAAMEE CAEIAHLSET IVIGQQVDAD GVIVTLADGT SRRGRLLVGC
DGRASGTARR AGIGRTGWGY DQTALVCAVS HELPHEGTAH QFFMPGGPLA ILPLPGNRSS
IVWSERTAQA ERFAALDDAA FLEALRPRFG DFLGEIALVG ARFTYPLSLT LANAMVADRL
ALVGDAAHGV HPIAGQGLNL GFRDVGALAE VLADAARRGE DIAARDVLDR YARWRRFDTA
TLAVATDAVN RLFSNDNPLL RLGRDLGMGL VNALPGARRT FIREAAGLTG DVPRLLQGRP
V
|
|---|
| |