| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0061 |
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| Symbol | |
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| ID | 5711683 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 60992 |
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| End bp | 62323 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641265955 |
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| Product | amidase |
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| Protein accession | YP_001531411 |
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| Protein GI | 159042617 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.222867 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0000105372 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACAAAA GCTGGCTGAC GGCAAGCGCG GCGGCGCAGG GGCGCGCGAT CGCGGAGGGC
ACCCTCGACC CCGTGGCCCT GACCGAGGCC TATCTTGACA AGATCGCCTC GCGCGCCGAA
AGCCCGCGCA TCTATGCCCG CACCACGCCC GACCGTGCCC TGTCCGAGGC GATGGCCGCC
CATGATCGCG CCAGGTCGCA GACCCGGCAC GGGCCGCTGG ACGGGGTGCC GATCTCGTGG
AAGGACCTGT TCGACACCGC TGGCGTGGCC ACGGAGTCCG GCACGGCGCT CCTGAAGGGC
CGCACCCCCG ACCGCGACGC GGAGGTGCTG GCCAACGCCA CCGCGGCGGG GCTCGTCTGC
CTCGGCAAGA CGCATCTGTC GGAGCTGGCC TTCTCGGGGC TTGGCCTCAA CCCGATCACC
GCCACCCCGC CCAACATCAA CGACCCCGGT GCGGTGCCCG GCGGTTCGTC CTCGGGCGCC
GCGGCGTCGG TGGCCTTCGG GCTGGCCGCC GCCGGGATCG GCTCGGACAC TGGCGGGTCC
GTGCGCATCC CCTCGGCCTG GAACGATCTC GTGGGGCTGA AGACAACCTC CGGCCTGTTG
TCGCTCGAAG GCGCCGTGCC GCTCGCCAGC GCCTTCGACA CGGTCGGCCC CCTCACCCGC
ACGGTGGAGG ACGCGGCGCT CCTGCTCGGC GCCCTCGGGG GCACGAAAGC CCCCGACCTG
CGCGGCGCAA CCCTCACAGG CACCCACCTC GCCGTCCTGC GCACCGGAGC GTTCGAAGAC
ATCCGGCCCG AGCCCGAGCA GGCCTTCGCG GCCGCCGTGG CGCGTCTGGC CGAGGCGGGC
GCGCAGATCA CCGAGTTGCA CGCCCCCGAA GTGGACGAGG CGCTTGCACT CTCCGGCGTG
CTCTTTGCCA CCGAAGCCTA CGGCATCTGG AAGGACGTGA TCGAGGCCGC CCCGGAAAAG
ATGTTCCCCC CCATCCTCGA CCGCTTCCGC GGCGGGCGGG ACTACGATGC CCCGGCCTAT
GTGGCGGGCT GGCGCAAGCT GGTCGAATTG CGCGCGGTCT GGGCGGACCG CACCCGGGCC
TTCGACGGCG TGCTGCTGCC CACCGCCCCG ACCCTGCCGC CCAATGTGGA CCGGCTCCTG
TCGGAAAAGG CCTATTTTGT CGAGGAAAAC CTGCTCGCCC TGCGCAACAC GCGCATCGGC
AACCTGATGG GGGTCTGCGC GCTGAACCTG CCCACGGGCA CCCCCTCCTG CGGGCTGTCG
ATCATGGGCC AACCCTTCGG CGAGGCCGCC CTCCTGCGGC TCGGGGCGGC GGCGGAGGCC
GCGCTGACCT GA
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| Protein sequence | MDKSWLTASA AAQGRAIAEG TLDPVALTEA YLDKIASRAE SPRIYARTTP DRALSEAMAA
HDRARSQTRH GPLDGVPISW KDLFDTAGVA TESGTALLKG RTPDRDAEVL ANATAAGLVC
LGKTHLSELA FSGLGLNPIT ATPPNINDPG AVPGGSSSGA AASVAFGLAA AGIGSDTGGS
VRIPSAWNDL VGLKTTSGLL SLEGAVPLAS AFDTVGPLTR TVEDAALLLG ALGGTKAPDL
RGATLTGTHL AVLRTGAFED IRPEPEQAFA AAVARLAEAG AQITELHAPE VDEALALSGV
LFATEAYGIW KDVIEAAPEK MFPPILDRFR GGRDYDAPAY VAGWRKLVEL RAVWADRTRA
FDGVLLPTAP TLPPNVDRLL SEKAYFVEEN LLALRNTRIG NLMGVCALNL PTGTPSCGLS
IMGQPFGEAA LLRLGAAAEA ALT
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