Gene Dshi_0060 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_0060 
Symbol 
ID5711682 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp59687 
End bp60868 
Gene Length1182 bp 
Protein Length393 aa 
Translation table11 
GC content69% 
IMG OID641265954 
Productaminotransferase class I and II 
Protein accessionYP_001531410 
Protein GI159042616 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0436] Aspartate/tyrosine/aromatic aminotransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.119317 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0000032787 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGATTTTC CCGAGCGGTT TTCTGCGCTT CCGGAATATG CGTTCCCGCG TCTGCGGGCC 
CTTTTGGACG GCCACCCGCC CGGTGGCTCG ACCCTTGCCA TGTCCATTGG CGAGCCGCAG
CACCCGTTCC CGCAGATCGC TACCGACGCG CTGGCCGAGG CCCTGCCGCT CTTCAACAAA
TACCCGCCCA ATGATGGCGC GCCCGAACTC TGCGCCGCCA TCGCCGACTG GGTGCAGGGA
CGCTACGGCG TCAAGCTCGA CCCCGCGCGG CAGGTGCTGG CGCTCAACGG CACCCGCGAG
GGGCTGTTCG CGGCCTGCCT CGCACTCTGC CCCGACACCA AGGCGGGCGG GCAGCCCCTG
GTGGCGATGC CCAACCCGTT CTACCAGGTC TATGCCGTGG GCGCGCAGGC CGCCGGGGCC
CGGCCGCTCT TCGTCAATGC CACCGCCGAG ACTGGGTTTC TGCCCAATCT CACCACCCTG
CCGCCCGAGA CGCTGGACCG GATCGCCATC GCCTATGTCT GCTCGCCTTC GAACCCGCAA
GGCGCCGTGG CGGATGCGGG CTACTGGCGC GCCCTGATCG GGCTTGCGGA AAAGCACGAT
TTCTACGTCT TCGCGGACGA ATGCTATGCC GAGATCTACC GCGAAACGCC GCCCTGCGGC
GCGCTCGAAA TCGCAACCGC CATGGGCGCC GACCCCGAGC GCGTGGTGAT CTTCCATTCC
CTGTCCAAAC GCTCCAACCT GCCGGGGCTG CGCTCCGGTT TCGCCGCGGG CGGGCCGCGC
GCCATGGCCG AGATGAAGAA GCTGCGCGCC TATGCCGGCG CCCCCCTGCC CGGCCCCTTG
CACCCCGTGG CCACCGCCGT CTGGCGCGAC GAGGCCCATG TGGTCGAGAA CCGCGCCCTT
TACGCGGCCA AGTTCGACAC AGCCGACACC ATTCTGGGCG CCGTGCCCGG CTATACCAGC
CCGGCGGCCG GCTTCTTCCT GTGGCTGCCG GTTGAAGACG GCGAGGCCGC GGCGCTGAAG
CTCTGGACCG AGACCGGCGT GCGGGTCCTG CCCGGCGCCT ATCTCAGCCG TGACACCGAG
ACCGGCAACC CCGGCGCAGG CTTCATTCGG GTGGCCCTCG TGGCCGACGC CCCGGATGTG
GCCCGCGGTC TGACCCTTAT TCGCGACAGT TTGTATTCCT GA
 
Protein sequence
MDFPERFSAL PEYAFPRLRA LLDGHPPGGS TLAMSIGEPQ HPFPQIATDA LAEALPLFNK 
YPPNDGAPEL CAAIADWVQG RYGVKLDPAR QVLALNGTRE GLFAACLALC PDTKAGGQPL
VAMPNPFYQV YAVGAQAAGA RPLFVNATAE TGFLPNLTTL PPETLDRIAI AYVCSPSNPQ
GAVADAGYWR ALIGLAEKHD FYVFADECYA EIYRETPPCG ALEIATAMGA DPERVVIFHS
LSKRSNLPGL RSGFAAGGPR AMAEMKKLRA YAGAPLPGPL HPVATAVWRD EAHVVENRAL
YAAKFDTADT ILGAVPGYTS PAAGFFLWLP VEDGEAAALK LWTETGVRVL PGAYLSRDTE
TGNPGAGFIR VALVADAPDV ARGLTLIRDS LYS