Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0060 |
Symbol | |
ID | 5711682 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 59687 |
End bp | 60868 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641265954 |
Product | aminotransferase class I and II |
Protein accession | YP_001531410 |
Protein GI | 159042616 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.119317 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0000032787 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGATTTTC CCGAGCGGTT TTCTGCGCTT CCGGAATATG CGTTCCCGCG TCTGCGGGCC CTTTTGGACG GCCACCCGCC CGGTGGCTCG ACCCTTGCCA TGTCCATTGG CGAGCCGCAG CACCCGTTCC CGCAGATCGC TACCGACGCG CTGGCCGAGG CCCTGCCGCT CTTCAACAAA TACCCGCCCA ATGATGGCGC GCCCGAACTC TGCGCCGCCA TCGCCGACTG GGTGCAGGGA CGCTACGGCG TCAAGCTCGA CCCCGCGCGG CAGGTGCTGG CGCTCAACGG CACCCGCGAG GGGCTGTTCG CGGCCTGCCT CGCACTCTGC CCCGACACCA AGGCGGGCGG GCAGCCCCTG GTGGCGATGC CCAACCCGTT CTACCAGGTC TATGCCGTGG GCGCGCAGGC CGCCGGGGCC CGGCCGCTCT TCGTCAATGC CACCGCCGAG ACTGGGTTTC TGCCCAATCT CACCACCCTG CCGCCCGAGA CGCTGGACCG GATCGCCATC GCCTATGTCT GCTCGCCTTC GAACCCGCAA GGCGCCGTGG CGGATGCGGG CTACTGGCGC GCCCTGATCG GGCTTGCGGA AAAGCACGAT TTCTACGTCT TCGCGGACGA ATGCTATGCC GAGATCTACC GCGAAACGCC GCCCTGCGGC GCGCTCGAAA TCGCAACCGC CATGGGCGCC GACCCCGAGC GCGTGGTGAT CTTCCATTCC CTGTCCAAAC GCTCCAACCT GCCGGGGCTG CGCTCCGGTT TCGCCGCGGG CGGGCCGCGC GCCATGGCCG AGATGAAGAA GCTGCGCGCC TATGCCGGCG CCCCCCTGCC CGGCCCCTTG CACCCCGTGG CCACCGCCGT CTGGCGCGAC GAGGCCCATG TGGTCGAGAA CCGCGCCCTT TACGCGGCCA AGTTCGACAC AGCCGACACC ATTCTGGGCG CCGTGCCCGG CTATACCAGC CCGGCGGCCG GCTTCTTCCT GTGGCTGCCG GTTGAAGACG GCGAGGCCGC GGCGCTGAAG CTCTGGACCG AGACCGGCGT GCGGGTCCTG CCCGGCGCCT ATCTCAGCCG TGACACCGAG ACCGGCAACC CCGGCGCAGG CTTCATTCGG GTGGCCCTCG TGGCCGACGC CCCGGATGTG GCCCGCGGTC TGACCCTTAT TCGCGACAGT TTGTATTCCT GA
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Protein sequence | MDFPERFSAL PEYAFPRLRA LLDGHPPGGS TLAMSIGEPQ HPFPQIATDA LAEALPLFNK YPPNDGAPEL CAAIADWVQG RYGVKLDPAR QVLALNGTRE GLFAACLALC PDTKAGGQPL VAMPNPFYQV YAVGAQAAGA RPLFVNATAE TGFLPNLTTL PPETLDRIAI AYVCSPSNPQ GAVADAGYWR ALIGLAEKHD FYVFADECYA EIYRETPPCG ALEIATAMGA DPERVVIFHS LSKRSNLPGL RSGFAAGGPR AMAEMKKLRA YAGAPLPGPL HPVATAVWRD EAHVVENRAL YAAKFDTADT ILGAVPGYTS PAAGFFLWLP VEDGEAAALK LWTETGVRVL PGAYLSRDTE TGNPGAGFIR VALVADAPDV ARGLTLIRDS LYS
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