Gene Dshi_0040 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_0040 
Symbol 
ID5711662 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp42375 
End bp42662 
Gene Length288 bp 
Protein Length95 aa 
Translation table11 
GC content69% 
IMG OID641265934 
Productprotein of unknown function DUF1330 
Protein accessionYP_001531390 
Protein GI159042596 
COG category[S] Function unknown 
COG ID[COG5470] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.000083486 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCCAAGG GATACATCGT CGCGAGCATT CGCAGCAACG ACATGGAGAC GATCGGCCGC 
TTCGCCGCCG CCGCCGGTCC GGTGATCGCG GAGTACGGAG GGCGGGTGCT GGCGCGTGAC
CCGCAGCCGG AGGTGCGCGA GGGAGCCGAT ACGGGGATTG CCGTTCTGGT GGAGTTCGAC
GACGTGGCGA CAGCGCGCCG GTTCTACGAG TCCGCAGGGT ACACGGCGGC GAAGGCGATC
CGCGAGGCGG TGGCCGAGAC CGATCTGCGC ATCGTGACTG GGCTCTGA
 
Protein sequence
MPKGYIVASI RSNDMETIGR FAAAAGPVIA EYGGRVLARD PQPEVREGAD TGIAVLVEFD 
DVATARRFYE SAGYTAAKAI REAVAETDLR IVTGL