Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0039 |
Symbol | ribA |
ID | 5711661 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 41277 |
End bp | 42347 |
Gene Length | 1071 bp |
Protein Length | 356 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641265933 |
Product | GTP cyclohydrolase II |
Protein accession | YP_001531389 |
Protein GI | 159042595 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0807] GTP cyclohydrolase II |
TIGRFAM ID | [TIGR00505] GTP cyclohydrolase II |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.000270099 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCCCTGA CCCCCGATCC GCGCGAATTG CGCGCCCGTG CCTGGGCGGA CCTGCGCATG GGCGTGCCCG TGGTGCTGCA TTCCGAGGGC CGTGCGGTGC TGGCGCTGGC GGGCGAGACG CTCAAGCCTG CGCGATTGTC GGTGGTGGCG GGCATGGCGG AAGCGGTGCT CGCGATCACG GCGCGGCGGG CCGAGACCCT GCGCGCGGTG CCCTATGACG GGGATATCGC GCGGATCGCC CTGCCGGGCA ATGCGGATGC GCACTGGGTG CGGGCGGTGG CCGATCCTGC GGATGATCTG CGGATGCCGA TGAAGGGGCC GTTCCGGGTG CTGCGCGACG GAGACGCAGT GTTGCACCGG CTGGCGCTGA CCCTGTGCAA GGAAGCGCGG CTCTTGCCTG CGGCGGTGGT CGCGCCCGTG GTGCCCGGGT TCGGCCCGGC GGAGGGTCTG ACGGTTCTGG ATGCCGCCGA CCTGCGCGTG CCGATGGTGA TGGACGAGGT CGTCTCGGCC CGCGTGCCGC TGTCGGTGTC GGAGGCGGGG CGGCTGCATG TGTTCCGGCC CGAGGATGGC AGCGAGGAGC ATTACGCGGT CGAGATCGGC ACGCCGCCGC GCGACCAGCC GGTGCTGGCG CGGTTGCATT CGGCGTGTTT CACCGGTGAC CTGCTGGGGT CGCTGAAATG CGATTGCGGG CCGCAATTGC GTGGGGCGCT GGCGCAGATG GGGGCCGAAG GGGCGGGCGT ATTGCTGTAC CTGAACCAGG AGGGGCGGGG GATCGGGCTG GCCAACAAGA TGCGCGCCTA TGCCTTGCAG GACCAGGGGT TCGACACGGT GGAGGCGAAC CACCGGCTGG GCTTCGAGGA TGACGAGCGG GATTTCCGGA TCGGGGCGGA GCTTCTGCGG CGGCTGGGGT TTTCGGCCAC GCGGCTCATG ACGAACAACC CGGCCAAGGT GGCGATGATG GAGAATTGCG GGATCGCGGT GACCGAGCGC GTGCCGCTCA AGGTCGGGGA GACGCCGCAG AACGCCGGGT ACCTCGCGAC CAAGGCGGCG AAGTCGGGGC ATTTGTTGTA G
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Protein sequence | MSLTPDPREL RARAWADLRM GVPVVLHSEG RAVLALAGET LKPARLSVVA GMAEAVLAIT ARRAETLRAV PYDGDIARIA LPGNADAHWV RAVADPADDL RMPMKGPFRV LRDGDAVLHR LALTLCKEAR LLPAAVVAPV VPGFGPAEGL TVLDAADLRV PMVMDEVVSA RVPLSVSEAG RLHVFRPEDG SEEHYAVEIG TPPRDQPVLA RLHSACFTGD LLGSLKCDCG PQLRGALAQM GAEGAGVLLY LNQEGRGIGL ANKMRAYALQ DQGFDTVEAN HRLGFEDDER DFRIGAELLR RLGFSATRLM TNNPAKVAMM ENCGIAVTER VPLKVGETPQ NAGYLATKAA KSGHLL
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