Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0012 |
Symbol | dapE1 |
ID | 5711590 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 13129 |
End bp | 14268 |
Gene Length | 1140 bp |
Protein Length | 379 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641265906 |
Product | succinyl-diaminopimelate desuccinylase |
Protein accession | YP_001531362 |
Protein GI | 159042568 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGACC CTGTTGCCCT GACCGCCGAT CTGATCCGCT GCCCGTCCGT GACGCCCGAG GAGGGCGGCG CGCTGAGCCT GCTGGAGGCG CGGCTGTCGG CGGCGGGTTT CGCCTGCACC CGGGTGGACC GGAACGGGAT CGCGAACCTC TTTGCCCGGT GGGGCGAAAA GGGCCATGCG CGGAGTTTCG GGTTCAACGG GCACACGGAT GTGGTGCCCG TGGGCGCGCG GGCCGATTGG CGGTTCGACC CGTTCGGGGC GCAGGTGGAG GGTGACTGGA TGTATGGCCG GGGCGCGGTG GACATGAAAT CCGCCGTGGC CGCCTTTGCC GCCGCGGCGA TGGATTTCGT GGCCGACACG CCCCCCGATG GCGCGGTGAT CCTGGCGATC ACCGGGGACG AGGAGGGCGA TGCGAAGGAC GGGACCGTCG CCCTGCTGGA CTGGATGGCG GCGCAGGGCG AGGCGATGGA TGTCTGCCTG GTGGGGGAGC CGACCTGCCC GGACGAGATG GGCGAGATGA TGAAGATCGG GCGCCGCGGC TCGATGACGT TTTTCTTCGA GGCGCTGGGC GTGCAGGGCC ATTCCGCCTA TCCGCACCGC GCGAAGAACC CGCTGCCCGC GCTGGCCAAG CTGGTGGATC GGCTGGCGGG GCTGGAGCTG GATACCGGGA CCGATCATTT CGATCCCTCG ACGCTCGCGG TGACCACCTT CGACACCGGC AACCCGGCCA ATAACGTGAT CCCGGCGGCG TGCCGGGCCA CGGTGAACAT CCGGTTCAAC GATGCCCATT CGTCGGAAAG CCTGACCGCG ATGGTGCGCG GGATCGCGGC GGAGGTGGCC GCCGAGACCG GGATCGAGAT CACCGACCGG GTGTCGGTCT CGGGCGAGAG CTTCATCACC CCCCCGGGGC GGCTGTCGGA CCTGGTCGCC GCGGCGGTGG AGACCGAGAC CGGCCGGGTG CCGGTGCTGT CGACCTCTGG CGGGACGTCG GACGCGCGGT TCGTGCAGCA CCACTGCCCG GTGGTGGAGT TCGGCCTTGT GGGCAAGTCC ATGCACCAGG TGGACGAGCG GGTGGCGATT GCCCAGATCC CGCAGCTCAA GGCGATCTAC ACCCGGATAT TGCGCGACTA TTTCGCATGA
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Protein sequence | MTDPVALTAD LIRCPSVTPE EGGALSLLEA RLSAAGFACT RVDRNGIANL FARWGEKGHA RSFGFNGHTD VVPVGARADW RFDPFGAQVE GDWMYGRGAV DMKSAVAAFA AAAMDFVADT PPDGAVILAI TGDEEGDAKD GTVALLDWMA AQGEAMDVCL VGEPTCPDEM GEMMKIGRRG SMTFFFEALG VQGHSAYPHR AKNPLPALAK LVDRLAGLEL DTGTDHFDPS TLAVTTFDTG NPANNVIPAA CRATVNIRFN DAHSSESLTA MVRGIAAEVA AETGIEITDR VSVSGESFIT PPGRLSDLVA AAVETETGRV PVLSTSGGTS DARFVQHHCP VVEFGLVGKS MHQVDERVAI AQIPQLKAIY TRILRDYFA
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