| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0001 |
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| Symbol | gltD |
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| ID | 5713708 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 128 |
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| End bp | 1567 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641265895 |
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| Product | putative oxidoreductase |
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| Protein accession | YP_001531351 |
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| Protein GI | 159042557 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
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| TIGRFAM ID | [TIGR01317] glutamate synthases, NADH/NADPH, small subunit
[TIGR01318] glutamate synthase small subunit family protein, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAACC AGCCGATGCT CAAGTTCGTC AAGATCCCGA AGGACATGCC CGAGAAACGG
GATGCGGATA CGCGCAAGCA GGACTTCGAC GAGATCTACC AGGAGTATGC CGCCGAGAAG
GCCGCCGAGC AAGCCTCGCG CTGTTCGCAG TGTGGCGTGC CCTATTGTCA GAGCCATTGC
CCCCTGCACA ACAACATCCC CGACTGGCTC AAGCTGACCG CCGAAGGCCG GCTCGAAGAG
GCCTATGAGC TCAGCCAGGC CACCAACACC TTCCCCGAGA TCTGCGGCCG CATCTGCCCG
CAGGACCGCC TGTGCGAAGG CAACTGCGTG ATCGAGAAGT CCGGGCACGG CACCGTCACC
ATCGGCTCGG TCGAGAAATA CATCACCGAC ACCGCCTGGG AAAAGGGCTG GGTCAAGCCG
ATCACCCCCG CCCAGGAACG CCCCGAGAGC GTCGGCATCA TCGGCGCGGG CCCGGGTGGG
CTTGCGGCGG CGGACGTGCT GCGCCGCCAG GGCGTGCAGG TCACGATCTA TGACCGCTAC
GACCGCGCGG GCGGCCTGCT GACCTATGGG ATCCCGGGCT TCAAGCTGGA AAAGGACGTG
GTCATGCGCC GCAACGACCA GCTGGAGCAG GGCGGGGTGA CGTTCGAGCT GAACTGTGAC
GTGGGCACGG ACATCTCCTT CGACAAGATC CGCGAGAAGC ACGACGCCGT GCTGATCGCC
ACGGGCGTCT ATAAATCACG GGATCTGGGC GGTCCGGGCG CGGGCGCGGG CGGGATCGTG
CGCGCCATCG ACTATCTCAC GGCGTCCAAC CGCAAGAGCT TCGGCGACGC GGTGCCGGAG
TTCGACAGCG GCGAGCTGAA CGCCGAAGGC AAGCGCGTGG TCGTCATCGG CGGCGGCGAC
ACGGCCATGG ACTGCGTGCG CACGGCCACG CGCCAGGGCG CGACATCGGT CAAATGCCTC
TATCGCCGGG ACCGGGCGAA CATGCCCGGC TCCCAGCGCG AAGTGCAGAA CGCCGAAGAG
GAGGGCGTGG AATTCGTCTG GCTCACTGCG CCCCAGGGGT TTGCGGGCGA CACGGACGTC
ACCGGCGTCA TGGTGCAGAA GATGCGCCTC GGCGCGCCGG ACGCCACGGG CCGCCAGGCC
CCCGAACTGA TCGAGGGCGC GGATTACGTC GAGGACGCGG ATCTGGTCAT CAAGGCGCTG
GGCTTCGAGC CCGAGGATCT GCCGACGCTC TGGGGCACAC CGGAGCTGGA AGTGACCCGC
TGGGGCACGA TCAAGGCCGA TTTCCGCACC CATGAGACGG CGCTGCCGGG GGTCTATGCG
GCGGGCGATA TCGTGCGCGG CGCGTCCCTG GTGGTCTGGG CCATCCGGGA CGGGCGCGAG
GCCGCCGAGG CCATGCTGGA AAAATTCAAC GCCAAGGCCA CATCCATGGC CGCGGAATAG
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| Protein sequence | MANQPMLKFV KIPKDMPEKR DADTRKQDFD EIYQEYAAEK AAEQASRCSQ CGVPYCQSHC
PLHNNIPDWL KLTAEGRLEE AYELSQATNT FPEICGRICP QDRLCEGNCV IEKSGHGTVT
IGSVEKYITD TAWEKGWVKP ITPAQERPES VGIIGAGPGG LAAADVLRRQ GVQVTIYDRY
DRAGGLLTYG IPGFKLEKDV VMRRNDQLEQ GGVTFELNCD VGTDISFDKI REKHDAVLIA
TGVYKSRDLG GPGAGAGGIV RAIDYLTASN RKSFGDAVPE FDSGELNAEG KRVVVIGGGD
TAMDCVRTAT RQGATSVKCL YRRDRANMPG SQREVQNAEE EGVEFVWLTA PQGFAGDTDV
TGVMVQKMRL GAPDATGRQA PELIEGADYV EDADLVIKAL GFEPEDLPTL WGTPELEVTR
WGTIKADFRT HETALPGVYA AGDIVRGASL VVWAIRDGRE AAEAMLEKFN AKATSMAAE
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