| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_3268 |
|---|
| Symbol | |
|---|
| ID | 5696131 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 3934266 |
|---|
| End bp | 3937505 |
|---|
| Gene Length | 3240 bp |
|---|
| Protein Length | 1079 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641265888 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001531148 |
|---|
| Protein GI | 158523278 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTACG TCGACCTGAT CCACAACCTG GCTCTGCTGG TGGCATTAAG CATCGTCTCC
GGATTTATTG AAAAACGGTG GCCCCGCCAC ACCCGGGCGG GTATCGGGCT TCAGGGCCTT
CTTTTCGGCG GCACCGCGGT GCTGGGGATG CTGCGGCCCC TGAACCTGGG GCCCGGCCTG
ATTTTTGACG GCCGGTCCAT CATGGTCAGC CTGTGCGCCC TGTTTTTCGG CCCCTGGGCC
GCGGCCGTGG CGAGTGCGCT GCCCATGGCC TGCCGGGTCT GGCTGGGAGG GGCCGGCACA
CTGACCGGCC TGCTGGTGAT CCTTTCGTCG GCCGTTGTCG GCCTGCTGGC CCGGTATCGC
CTTCAGCCGG ATACGCGGCC CCCGTCCGTT CAGGCCCTCT ACCTGTTCGG CATGGCCGTC
CACCTGGCCA TGATCGCCCT GATGTTCACC CTGCCCGAAG GGGCCGGCAT GGCGGTTATC
CGACGCATCG GCCCGCCGGT GCTGCTGCTC TATCCCCTGG CCACCATCCT TGCCGGAAAG
ATTTTGAGCG ACCAGGTGAA AGCCGGGCAA CAGCTGGCGG TCCTGCTGGA GAGCGAAAAA
CGATTACGCG CAACCCTTGA TGCAACGCCC TTTCCAATTG CAGTTGTTGA TTTACAGGAT
GATACCATTT TTTTCTGGAG TCGCAGCGCG CTTGAACTTT TTGGACATAC GGCATACACA
ACTTCGGAAT GGTATCAGAT AGCGTACCCC GATCCTGATT ACAGGCAAGA CGTGATTGAA
CGGTGGAAGC CGTTTCTTGA AAAAGCCAGG AACTCCGGCC AGACGGTTAA CACCGGTGAA
TATCGAGTGA CCTGCAAGGA TGGATCTGAA CGTATTTGTG AGCTCTATGC CACCTTTCTC
CCCGATAATC TTATCGTGAC ATTCAGCGAC ATCACCGAGC AAAAAAAGGC CGAGGCGTCG
CTGCGATCAA ATTATGCGCT GCTGCAGATT GCCGGGGAAA CCGCCGGATT CGGCGGCTGG
GACGTGGATT TAAAAACATA TATTTCAACC TGGTCGGATA CGGTGGCCGA CATTCACGAA
ATGCCGCACG GCTACGCGCC GCCTGTGGAG GAGGGTATTA AGTTTTATGC GCCCGAATGG
CGGGAAAGAA TCACTCGGGT TTTTACAGAT TGCGCTCAAA AAGGCATTCC CTATGATGAG
GAAATGGAGA TCCTTACATC AAAAGGAAAA CGCGTATGGG TGCGGACCAT TGGCAGATCG
GTGAAAGATG AAAACGGCAG GATTATCAAA GTACAGGGTT CTTTTCAGGA CATCAGCGAA
CACAAACGGA CGGAAGGGAA ACTGAAAGAA CAGGCACAAT TATTTAAGGC CGTTTCTGAT
AATATGTTTG ACCTTGTTGC CTTGACTGAC CTGGAAGGCA ATTTCATATT CGTGGGCGCC
TCACACAATA TATTGGGATA TGATATCGAT TCCCTGATTG GACGAAATGT TCTGGAATTC
GTCCACCCGG AGGATGTGCA GCAAGTATCC GTTTCTTTTC GTGACTTCCT GTCCACAGGC
GATGACAGTC GAAAAGTGGA GTACCGCTAT CGATGCGCGG ATGAAAGCTA TCTCTGGTTC
GAGACTGTCG GAAGATTTGT CCGGGATGAT AATGGTGATT TAAAGGGAAT TGTCTTCAGC
ACAAGGGACG TCACCGAACG CAGGCGGATC GAACAGGAAC TGAAAGAAAG CGAAGAGCGT
TTCAGGGCGT TGCATAACGC TTCTTTCGGG GGAATCGCCA TTCACGACAA GGGCCTCATC
CTGGAATGCA ACCAGGGGTT GTCCGAGATC ACCGGTTATA CCTATGATGA ACTGATCGGG
ATGCAGGGGT TGTCACTGAT CTCCGACGGC ACGCGGGACA AGGTTGTACG CAATATTAAC
GCCGGTTATG AAAAGCCCTA TGAGGCGGAA GGCGTCCGCA AAAACGGTGG AATATATCCT
CTCCGGCTGG AAGCCAGAAA CATCAGATAC AAAGGCAAAG ATGTCAGGGT GGTGGAGTTT
AGAGACATCA CTGAAAACAA GCGGGCTGAG AAAGAAAAAG AACATCTTGA GGCGCAGCTC
AGCCATGCAC AGAAGATGGA GTCCGTGGGC CGGCTGGCCG GGGGCGTGGC CCATGATTTC
AACAACATGC TCAACGTGAT TCTCGGGTAC ACCGAACTGG CCCTGCAGAA CATGGACAAA
GACGACCCCC TTTACAACGA CCTGACCGAA ATCCTTGACG CGGCCCGGCG CTCGTCCGAC
ATCACCCGGC AACTGCTGGC CTTTGCCCGG CGCCAGACCA TCGCGCCCCG CACCATCGAT
CTGAACGAGA CCGTGGAGGG CATGCTCAAG ATGCTGCGCC GCCTCATCGG CGAAGACATC
GACCTTGCCT GGGAACCGAG CTCGGGCCTG TGGCTGGTGA ACATGGACCC GGCCCAGGTG
GACCAGGTGC TGGCCAACCT GCTGGTCAAT GCCCGGGACG CCATTGACGG CGTAGGTAGG
GTCACCATTG AGACGGACAA CGCTGTTCTG GACGAAGCCT ACTGCGCCGA CCGGCCCGGC
TTTGTTCCCG GCGAATTTGT ACTGCTGGCG GTCAGCGACA GCGGCTGCGG CATGGACAAA
AACACAATGG ACAACCTGTT TGAGCCGTTT TTTACCACCA AAACCGTAGG CAAAGGCACG
GGCCTGGGCC TGGCCACGGT CTACGGCATT GTCCGGCAGA ACGAGGGGTT CATTACTGTG
CACAGCGAGC CTGGCCAGGG CACCACCTTC AAAATCTACC TGCCCCGCCA CGTGGGAGAT
GCCGTCTTCG AGCCGCTTTT CACTGAACCG GAAACACCCC TTGGCACCGG CCAAACCGTG
CTGGTGGTGG AAGATGAGGA AGCGATTTTA AGGCTTGCCG ACAAGATGCT GACCGGCATG
GGCTACACCG TACTGACGGC GCCCGGCCCG GCCGCGGCCC TGGAACTGGC AAAACAGCAC
ACCGGCCCCA TCGACCTGCT GATAACCGAT GTGGTGATGC CGGAAATGAA CGGCCGGGAT
CTGGCGAAAA AGCTAAGAGA GGGATATCCG GATCTGCGGG TGCTGTTCAT GTCCGGGTAC
ACGGCCAATG TCATCGCCCA CCGCGGCATT CTGGACAGGG GGGTGCAGTT CATCCAGAAA
CCGTTTAATA AAAGCGACCT GGCACGAAAG GTGAGAGAAG CCTTGGGGAA TGATGAATGA
|
|---|
| Protein sequence | MVYVDLIHNL ALLVALSIVS GFIEKRWPRH TRAGIGLQGL LFGGTAVLGM LRPLNLGPGL
IFDGRSIMVS LCALFFGPWA AAVASALPMA CRVWLGGAGT LTGLLVILSS AVVGLLARYR
LQPDTRPPSV QALYLFGMAV HLAMIALMFT LPEGAGMAVI RRIGPPVLLL YPLATILAGK
ILSDQVKAGQ QLAVLLESEK RLRATLDATP FPIAVVDLQD DTIFFWSRSA LELFGHTAYT
TSEWYQIAYP DPDYRQDVIE RWKPFLEKAR NSGQTVNTGE YRVTCKDGSE RICELYATFL
PDNLIVTFSD ITEQKKAEAS LRSNYALLQI AGETAGFGGW DVDLKTYIST WSDTVADIHE
MPHGYAPPVE EGIKFYAPEW RERITRVFTD CAQKGIPYDE EMEILTSKGK RVWVRTIGRS
VKDENGRIIK VQGSFQDISE HKRTEGKLKE QAQLFKAVSD NMFDLVALTD LEGNFIFVGA
SHNILGYDID SLIGRNVLEF VHPEDVQQVS VSFRDFLSTG DDSRKVEYRY RCADESYLWF
ETVGRFVRDD NGDLKGIVFS TRDVTERRRI EQELKESEER FRALHNASFG GIAIHDKGLI
LECNQGLSEI TGYTYDELIG MQGLSLISDG TRDKVVRNIN AGYEKPYEAE GVRKNGGIYP
LRLEARNIRY KGKDVRVVEF RDITENKRAE KEKEHLEAQL SHAQKMESVG RLAGGVAHDF
NNMLNVILGY TELALQNMDK DDPLYNDLTE ILDAARRSSD ITRQLLAFAR RQTIAPRTID
LNETVEGMLK MLRRLIGEDI DLAWEPSSGL WLVNMDPAQV DQVLANLLVN ARDAIDGVGR
VTIETDNAVL DEAYCADRPG FVPGEFVLLA VSDSGCGMDK NTMDNLFEPF FTTKTVGKGT
GLGLATVYGI VRQNEGFITV HSEPGQGTTF KIYLPRHVGD AVFEPLFTEP ETPLGTGQTV
LVVEDEEAIL RLADKMLTGM GYTVLTAPGP AAALELAKQH TGPIDLLITD VVMPEMNGRD
LAKKLREGYP DLRVLFMSGY TANVIAHRGI LDRGVQFIQK PFNKSDLARK VREALGNDE
|
|---|
| |