| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_3267 |
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| Symbol | |
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| ID | 5696130 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 3930742 |
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| End bp | 3934284 |
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| Gene Length | 3543 bp |
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| Protein Length | 1180 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641265887 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_001531147 |
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| Protein GI | 158523277 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCTACC ATCCACCTGT CATGAACATA AAAACCCGGT ACGCGGTTCC GCTGTTTTGC
GTGCTGGTGT GCGCCGGCCT GGCCGGCAAC GCCTTTCCGG TTTCCATTCT CAACGCCCAT
TTTATATTCG GCAGCCTCTT TGCCATGCTG GCCCTTCAGA TTTTTGGCTG GATTCCGGGC
ATAGCGGCCG GGGCTGTTAT CTCGGCCTAC ACCTGGCTGG CCTGGAACCA CCCCTGGGCC
ATGGTCACCA TGACTGCCGA GGTGGCGGTG GCGGGCTTGC TTTTTACCCG CCGCCGATGG
TCCCTGGTAA CCGCCGATAC CGTTTACTGG CTCTGCATGG GCCTTCCCCT GGGGTTTGTC
TGTTTTCATT TCATTTCCGG CGTTTCCTCC GGCGACGCCC TGTTTCTGCT CACCAAGCAG
GCGATCAACG GCATTGCCAA CGCTTTGATC GCCCGGTTGA TGGTCACCGG CTGGATCGTC
ATCCGGCGCA CAAACGGACG CATCGCCTTT CGCGAACTCT TATCCAACCT GATGCTTGTT
TTCGTGCTGG GTCCGTTTCT GGTTTTTCTG GCCCTGGCCG GCCGGGCCGA CATGGCGGAA
ACCGACCGCC AAATCCGCGA CACCCTGGCC TGGGACAGCC GCCAGTTGAC CGACGGTCTT
GAGACCTGGC TCGACCAAAG GGAGCGAGTG GTAGCCACCC TGGCCTCTCT GTCCCAAACC
CTGGACGCAG AAGAAATTCA GGCCCGTCTG GACCAGGCCT GGCAGTCGGA CAGCGGTTTT
CTGCGCATCG CCCTGATGAA CCGGTATTCC ACTGTAACGG CCGCGGCTCC GGAAACAGAA
GACGGCCGAA GCATTCTCGG CATGAACTAT GCCGACCGCC CCTATATTGC GGAGGCCAGA
AAAACCCTGA AACCGATCTT CTCGGATGTT CTGCTGTCAA AGTTCAGGCC CGAAGACCCC
ATTGTCATTG TGGTGGCACC GGTAGCAGCC GGCGGGGAGT ACAACGGCCT GGTAGCCGGC
CTGATAAAAT TTGACCGCAT TCGAACCCTG CTGGAGCTTC ATGCCACCGG ACCCAATGTC
CGCTATACCC TGGTGGATAA AAAGGGGCGC GTGATTCTCA GCAACCGGCC GGACCTGCCT
CCCCTTGCGT CATTTTCCCG GCCCGGGGGC CGGCTTTCCG CCCTTGACAA CGATCTGCTT
CAATGGATAC CGGACCTGCC GCCCAACACC TCCACCATCG ACCTGTGGGG AAAATCATTT
TACGTGGCCC GGTCCGCCCT GAGCCGCACC GCGGAGTGGT TCCTGATCCT GGAACAGCCG
GTTGCGCCGT TTCAGAAAAC GCTTTACCGC CGTTATGTGG CCGCTTTTTT TCTGGCGTTT
GCCATTCTGC TGGGGGCACT GGTCCTGGCC GAACTGATAA GCCGCCGCGT GGTCCGGCCC
ATTGACCGGA TCGTGGAGGC CACCCGGACC GTGCCTGCCA GGGTCGAGGC CGGGGAGCCG
GTTCAATGGC TTGAGAGCCC GGTGGTGGAG GCCGATTTTC TGATCACCAA CCTCAAGGTC
ATGTCCGATT CCCTGAAATA CAAATTCATC GAAAACCGGC AGATCAATGA ATCGCTGGAA
CAGCGGGTGG CGGAGCGGGC CGAAAAACTG CGTGAAAGCG AAGCCCTTCT TGAAAGCATG
ATTAAAAACA TGCCGGTAAT GGTCTTTTTA AAAGAGGCCG ACTCCCTCTG CTATGTAAAA
CTCAACCGGG CCGGGGAAAA ACTGCTGGGA TATTCGGAAC AGGAGATGGT CGGAAAAAAC
GATTATGACT TTTTCCCCAA AGCCGAGGCT GATCGTTCAG CCCAGACGGA CCGCCAGGCC
CTGGCTGAAG GCCGGCTTGT TGAAATCACC GAAGAGACCA TCCACACCCG GTACCTGGGG
GAGCGAATTT TATACACCCG AAAAATTCCC ATTTTTGACC GGCAAAAAAC CCCCCGTTAC
CTGCTGGGCA TATCCGAGGA TATCTCGGAA CGCAAACAAG GCCGGGACGA CCTGGAAGCG
GCCAACCGGA AACTGCGGCA GAGCCAGGCC GCCACCCTGA ATATTTTAGA AGACCTTAAG
GTGGAAAACG AGGCCAGAAG GAAAAACGCG GCTGAACGGG ACCGGCTCCA GGAGCAACTG
ATCCATTCCC AGAAGATGGA GTCCGTGGGC CGGCTGGCCG GGGGCGTGGC CCATGATTTT
AACAACATGC TCAACGTGAT TCTCGGGTAC ACCGAACTGG CCCTGCAGGA CATGTCCCCG
ACCGACCCCC TTTACGAGGA TTTAAAGGAA ATCCTTGACG CGGCCCGGCG CTCTTCCGAT
ATCACGGGCC AGCTTCTGGC CTTTGCCCGG CGCCAGACCA TCGCGCCCCG GACCATCGAC
CTGAACGACA CCGTGGAGGG CATGCTCAAG ATGCTGCGCC GCCTCATCGG CGAAGACATT
GATCTTGTCT GGGAGCCGGG CACGGGTCTG TGGCCGATAA ACATGGATCC GGCCCAGGTG
GACCAGGTGC TGGCCAACCT TCTGGTCAAT GCCAGGGATG CCATCAGCGG AGTGGGCAAG
GTCACCATTG AGACGGACAA CGCTGTGCTG GACGAAACCT ACTGCGCCGA CCGGCCCGGC
TTTGTTCCCG GCGAATTTGT CCTGCTGGCT GTCAGTGACG GCGGCTGCGG CATGGACAAG
ACAACAATGA ACAACCTGTT TGAGCCGTTT TTTACCACCA AGGGTGTGGG AGAAGGAACA
GGCCTGGGCC TGGCCACGGT CTACGGCATT GTGCGGCAGA ACAACGGGTT TATCAATGTG
TACAGCGAGC CCGGCCAGGG CACCACCTTC AAAATCTACC TGCCCCGCCA CATGGGAGAT
GCCGTCTCCG AACCGCTTTT CACCGCCACA GAAACGCTTC ATGGCACCGG TGAATCCTTA
CTGGTGGTGG AAGACGAGCC GTCCGTTTTA AAACTCGCCA ACAAGATGCT GGCCGGTCTG
GGTTACACCG TCATGACGGC CCAGGGCCCG GCCGCGGCCC TGGAACTGTC AAAACGGCAC
ACCGGCGGAA TCGACCTTCT AATCACCGAT GTGGTGATGC CGGAAATGAG CGGCCGGGAT
CTGGCGGAAA AACTGGAATC CATACACCCC GGCCTTCGGG TGCTCTACAT GTCCGGGTAT
ACAGCCAATG TTATCGCCCA TCGCGGCATT CTGGACAAGG GGGTGCAGTT CATCCAGAAA
CCGTTTAATA AAAACGACCT GGCACGGAAG GTGAGAGAAG CCTTGGGGAA TGATGAATGC
GGAATGATGA AAACTGAAAG AAAAATCAAA GGGAAAAATA AAGATAAACA TACTGGACAG
GACAAAGTTG TTTGCGTTGC GGATGGTCCG GCTTTACAAA CCCCGGCCAC GGAGCGCCGA
AGCCCGGAGG ACCGGCAAAC AAACCCAGGA GAAAAAAAGA TGGCGCTTCG CAAACATTCA
TCATTCATCA TTCCGCTTTC ATCATTCAAT AATAGGGAGC CTCAATGGTT TACGTCGACC
TGA
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| Protein sequence | MIYHPPVMNI KTRYAVPLFC VLVCAGLAGN AFPVSILNAH FIFGSLFAML ALQIFGWIPG
IAAGAVISAY TWLAWNHPWA MVTMTAEVAV AGLLFTRRRW SLVTADTVYW LCMGLPLGFV
CFHFISGVSS GDALFLLTKQ AINGIANALI ARLMVTGWIV IRRTNGRIAF RELLSNLMLV
FVLGPFLVFL ALAGRADMAE TDRQIRDTLA WDSRQLTDGL ETWLDQRERV VATLASLSQT
LDAEEIQARL DQAWQSDSGF LRIALMNRYS TVTAAAPETE DGRSILGMNY ADRPYIAEAR
KTLKPIFSDV LLSKFRPEDP IVIVVAPVAA GGEYNGLVAG LIKFDRIRTL LELHATGPNV
RYTLVDKKGR VILSNRPDLP PLASFSRPGG RLSALDNDLL QWIPDLPPNT STIDLWGKSF
YVARSALSRT AEWFLILEQP VAPFQKTLYR RYVAAFFLAF AILLGALVLA ELISRRVVRP
IDRIVEATRT VPARVEAGEP VQWLESPVVE ADFLITNLKV MSDSLKYKFI ENRQINESLE
QRVAERAEKL RESEALLESM IKNMPVMVFL KEADSLCYVK LNRAGEKLLG YSEQEMVGKN
DYDFFPKAEA DRSAQTDRQA LAEGRLVEIT EETIHTRYLG ERILYTRKIP IFDRQKTPRY
LLGISEDISE RKQGRDDLEA ANRKLRQSQA ATLNILEDLK VENEARRKNA AERDRLQEQL
IHSQKMESVG RLAGGVAHDF NNMLNVILGY TELALQDMSP TDPLYEDLKE ILDAARRSSD
ITGQLLAFAR RQTIAPRTID LNDTVEGMLK MLRRLIGEDI DLVWEPGTGL WPINMDPAQV
DQVLANLLVN ARDAISGVGK VTIETDNAVL DETYCADRPG FVPGEFVLLA VSDGGCGMDK
TTMNNLFEPF FTTKGVGEGT GLGLATVYGI VRQNNGFINV YSEPGQGTTF KIYLPRHMGD
AVSEPLFTAT ETLHGTGESL LVVEDEPSVL KLANKMLAGL GYTVMTAQGP AAALELSKRH
TGGIDLLITD VVMPEMSGRD LAEKLESIHP GLRVLYMSGY TANVIAHRGI LDKGVQFIQK
PFNKNDLARK VREALGNDEC GMMKTERKIK GKNKDKHTGQ DKVVCVADGP ALQTPATERR
SPEDRQTNPG EKKMALRKHS SFIIPLSSFN NREPQWFTST
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