Gene Dole_3267 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_3267 
Symbol 
ID5696130 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp3930742 
End bp3934284 
Gene Length3543 bp 
Protein Length1180 aa 
Translation table11 
GC content58% 
IMG OID641265887 
ProductPAS/PAC sensor hybrid histidine kinase 
Protein accessionYP_001531147 
Protein GI158523277 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCTACC ATCCACCTGT CATGAACATA AAAACCCGGT ACGCGGTTCC GCTGTTTTGC 
GTGCTGGTGT GCGCCGGCCT GGCCGGCAAC GCCTTTCCGG TTTCCATTCT CAACGCCCAT
TTTATATTCG GCAGCCTCTT TGCCATGCTG GCCCTTCAGA TTTTTGGCTG GATTCCGGGC
ATAGCGGCCG GGGCTGTTAT CTCGGCCTAC ACCTGGCTGG CCTGGAACCA CCCCTGGGCC
ATGGTCACCA TGACTGCCGA GGTGGCGGTG GCGGGCTTGC TTTTTACCCG CCGCCGATGG
TCCCTGGTAA CCGCCGATAC CGTTTACTGG CTCTGCATGG GCCTTCCCCT GGGGTTTGTC
TGTTTTCATT TCATTTCCGG CGTTTCCTCC GGCGACGCCC TGTTTCTGCT CACCAAGCAG
GCGATCAACG GCATTGCCAA CGCTTTGATC GCCCGGTTGA TGGTCACCGG CTGGATCGTC
ATCCGGCGCA CAAACGGACG CATCGCCTTT CGCGAACTCT TATCCAACCT GATGCTTGTT
TTCGTGCTGG GTCCGTTTCT GGTTTTTCTG GCCCTGGCCG GCCGGGCCGA CATGGCGGAA
ACCGACCGCC AAATCCGCGA CACCCTGGCC TGGGACAGCC GCCAGTTGAC CGACGGTCTT
GAGACCTGGC TCGACCAAAG GGAGCGAGTG GTAGCCACCC TGGCCTCTCT GTCCCAAACC
CTGGACGCAG AAGAAATTCA GGCCCGTCTG GACCAGGCCT GGCAGTCGGA CAGCGGTTTT
CTGCGCATCG CCCTGATGAA CCGGTATTCC ACTGTAACGG CCGCGGCTCC GGAAACAGAA
GACGGCCGAA GCATTCTCGG CATGAACTAT GCCGACCGCC CCTATATTGC GGAGGCCAGA
AAAACCCTGA AACCGATCTT CTCGGATGTT CTGCTGTCAA AGTTCAGGCC CGAAGACCCC
ATTGTCATTG TGGTGGCACC GGTAGCAGCC GGCGGGGAGT ACAACGGCCT GGTAGCCGGC
CTGATAAAAT TTGACCGCAT TCGAACCCTG CTGGAGCTTC ATGCCACCGG ACCCAATGTC
CGCTATACCC TGGTGGATAA AAAGGGGCGC GTGATTCTCA GCAACCGGCC GGACCTGCCT
CCCCTTGCGT CATTTTCCCG GCCCGGGGGC CGGCTTTCCG CCCTTGACAA CGATCTGCTT
CAATGGATAC CGGACCTGCC GCCCAACACC TCCACCATCG ACCTGTGGGG AAAATCATTT
TACGTGGCCC GGTCCGCCCT GAGCCGCACC GCGGAGTGGT TCCTGATCCT GGAACAGCCG
GTTGCGCCGT TTCAGAAAAC GCTTTACCGC CGTTATGTGG CCGCTTTTTT TCTGGCGTTT
GCCATTCTGC TGGGGGCACT GGTCCTGGCC GAACTGATAA GCCGCCGCGT GGTCCGGCCC
ATTGACCGGA TCGTGGAGGC CACCCGGACC GTGCCTGCCA GGGTCGAGGC CGGGGAGCCG
GTTCAATGGC TTGAGAGCCC GGTGGTGGAG GCCGATTTTC TGATCACCAA CCTCAAGGTC
ATGTCCGATT CCCTGAAATA CAAATTCATC GAAAACCGGC AGATCAATGA ATCGCTGGAA
CAGCGGGTGG CGGAGCGGGC CGAAAAACTG CGTGAAAGCG AAGCCCTTCT TGAAAGCATG
ATTAAAAACA TGCCGGTAAT GGTCTTTTTA AAAGAGGCCG ACTCCCTCTG CTATGTAAAA
CTCAACCGGG CCGGGGAAAA ACTGCTGGGA TATTCGGAAC AGGAGATGGT CGGAAAAAAC
GATTATGACT TTTTCCCCAA AGCCGAGGCT GATCGTTCAG CCCAGACGGA CCGCCAGGCC
CTGGCTGAAG GCCGGCTTGT TGAAATCACC GAAGAGACCA TCCACACCCG GTACCTGGGG
GAGCGAATTT TATACACCCG AAAAATTCCC ATTTTTGACC GGCAAAAAAC CCCCCGTTAC
CTGCTGGGCA TATCCGAGGA TATCTCGGAA CGCAAACAAG GCCGGGACGA CCTGGAAGCG
GCCAACCGGA AACTGCGGCA GAGCCAGGCC GCCACCCTGA ATATTTTAGA AGACCTTAAG
GTGGAAAACG AGGCCAGAAG GAAAAACGCG GCTGAACGGG ACCGGCTCCA GGAGCAACTG
ATCCATTCCC AGAAGATGGA GTCCGTGGGC CGGCTGGCCG GGGGCGTGGC CCATGATTTT
AACAACATGC TCAACGTGAT TCTCGGGTAC ACCGAACTGG CCCTGCAGGA CATGTCCCCG
ACCGACCCCC TTTACGAGGA TTTAAAGGAA ATCCTTGACG CGGCCCGGCG CTCTTCCGAT
ATCACGGGCC AGCTTCTGGC CTTTGCCCGG CGCCAGACCA TCGCGCCCCG GACCATCGAC
CTGAACGACA CCGTGGAGGG CATGCTCAAG ATGCTGCGCC GCCTCATCGG CGAAGACATT
GATCTTGTCT GGGAGCCGGG CACGGGTCTG TGGCCGATAA ACATGGATCC GGCCCAGGTG
GACCAGGTGC TGGCCAACCT TCTGGTCAAT GCCAGGGATG CCATCAGCGG AGTGGGCAAG
GTCACCATTG AGACGGACAA CGCTGTGCTG GACGAAACCT ACTGCGCCGA CCGGCCCGGC
TTTGTTCCCG GCGAATTTGT CCTGCTGGCT GTCAGTGACG GCGGCTGCGG CATGGACAAG
ACAACAATGA ACAACCTGTT TGAGCCGTTT TTTACCACCA AGGGTGTGGG AGAAGGAACA
GGCCTGGGCC TGGCCACGGT CTACGGCATT GTGCGGCAGA ACAACGGGTT TATCAATGTG
TACAGCGAGC CCGGCCAGGG CACCACCTTC AAAATCTACC TGCCCCGCCA CATGGGAGAT
GCCGTCTCCG AACCGCTTTT CACCGCCACA GAAACGCTTC ATGGCACCGG TGAATCCTTA
CTGGTGGTGG AAGACGAGCC GTCCGTTTTA AAACTCGCCA ACAAGATGCT GGCCGGTCTG
GGTTACACCG TCATGACGGC CCAGGGCCCG GCCGCGGCCC TGGAACTGTC AAAACGGCAC
ACCGGCGGAA TCGACCTTCT AATCACCGAT GTGGTGATGC CGGAAATGAG CGGCCGGGAT
CTGGCGGAAA AACTGGAATC CATACACCCC GGCCTTCGGG TGCTCTACAT GTCCGGGTAT
ACAGCCAATG TTATCGCCCA TCGCGGCATT CTGGACAAGG GGGTGCAGTT CATCCAGAAA
CCGTTTAATA AAAACGACCT GGCACGGAAG GTGAGAGAAG CCTTGGGGAA TGATGAATGC
GGAATGATGA AAACTGAAAG AAAAATCAAA GGGAAAAATA AAGATAAACA TACTGGACAG
GACAAAGTTG TTTGCGTTGC GGATGGTCCG GCTTTACAAA CCCCGGCCAC GGAGCGCCGA
AGCCCGGAGG ACCGGCAAAC AAACCCAGGA GAAAAAAAGA TGGCGCTTCG CAAACATTCA
TCATTCATCA TTCCGCTTTC ATCATTCAAT AATAGGGAGC CTCAATGGTT TACGTCGACC
TGA
 
Protein sequence
MIYHPPVMNI KTRYAVPLFC VLVCAGLAGN AFPVSILNAH FIFGSLFAML ALQIFGWIPG 
IAAGAVISAY TWLAWNHPWA MVTMTAEVAV AGLLFTRRRW SLVTADTVYW LCMGLPLGFV
CFHFISGVSS GDALFLLTKQ AINGIANALI ARLMVTGWIV IRRTNGRIAF RELLSNLMLV
FVLGPFLVFL ALAGRADMAE TDRQIRDTLA WDSRQLTDGL ETWLDQRERV VATLASLSQT
LDAEEIQARL DQAWQSDSGF LRIALMNRYS TVTAAAPETE DGRSILGMNY ADRPYIAEAR
KTLKPIFSDV LLSKFRPEDP IVIVVAPVAA GGEYNGLVAG LIKFDRIRTL LELHATGPNV
RYTLVDKKGR VILSNRPDLP PLASFSRPGG RLSALDNDLL QWIPDLPPNT STIDLWGKSF
YVARSALSRT AEWFLILEQP VAPFQKTLYR RYVAAFFLAF AILLGALVLA ELISRRVVRP
IDRIVEATRT VPARVEAGEP VQWLESPVVE ADFLITNLKV MSDSLKYKFI ENRQINESLE
QRVAERAEKL RESEALLESM IKNMPVMVFL KEADSLCYVK LNRAGEKLLG YSEQEMVGKN
DYDFFPKAEA DRSAQTDRQA LAEGRLVEIT EETIHTRYLG ERILYTRKIP IFDRQKTPRY
LLGISEDISE RKQGRDDLEA ANRKLRQSQA ATLNILEDLK VENEARRKNA AERDRLQEQL
IHSQKMESVG RLAGGVAHDF NNMLNVILGY TELALQDMSP TDPLYEDLKE ILDAARRSSD
ITGQLLAFAR RQTIAPRTID LNDTVEGMLK MLRRLIGEDI DLVWEPGTGL WPINMDPAQV
DQVLANLLVN ARDAISGVGK VTIETDNAVL DETYCADRPG FVPGEFVLLA VSDGGCGMDK
TTMNNLFEPF FTTKGVGEGT GLGLATVYGI VRQNNGFINV YSEPGQGTTF KIYLPRHMGD
AVSEPLFTAT ETLHGTGESL LVVEDEPSVL KLANKMLAGL GYTVMTAQGP AAALELSKRH
TGGIDLLITD VVMPEMSGRD LAEKLESIHP GLRVLYMSGY TANVIAHRGI LDKGVQFIQK
PFNKNDLARK VREALGNDEC GMMKTERKIK GKNKDKHTGQ DKVVCVADGP ALQTPATERR
SPEDRQTNPG EKKMALRKHS SFIIPLSSFN NREPQWFTST