| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_3266 |
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| Symbol | |
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| ID | 5696129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 3928184 |
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| End bp | 3930676 |
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| Gene Length | 2493 bp |
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| Protein Length | 830 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 641265886 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001531146 |
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| Protein GI | 158523276 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGACGC GTCGCAAACA TTCATCATTC ATCATTCATC ATTCATCATT TTTCCTCGCC
GTTGCCGCCC TTCTCATTTT TGCGGCCTTT TTCAACAAGC CCGTTGCCGC CGAAACCGTA
CGCCCGCCCC TCCTGTCCGC CGCCGAGATC AACTATCCGC CGTTTTCCAT CGTGGATGAC
CAGGGCCGGG CAGGCGGCTT TTCCGTTGAG CTGATGCGAG CCGCCCTGGG TGCCATGGGC
CGTGAGGTGG TGTTTCGTAC CGGCCCGTGG CCTGAAGTAA GAAGATGGCT GGAAACCGGC
GAGGTCGACG CCCTGCCCCT GGTGGGCCGG ACCCCGGAAC GGGAGCTTCT GTTTGATTTC
ACGGTGCCCT ACATGTCCCT TCACGGCGCC ATTGTGGTAC GAAAAGAGAC AACCGGCATT
CAGGGACTGG CCGACCTTGG CGGCCGAACC GTGGCCGTGA TGAAGGGGGA CAATGCCGAG
GAGTTTCTCC AGCGAAAAGA CCGGGGCATC AACATTCACT CCACCACGAC TTTTGAAGAG
GCCCTGCGCG ACCTTTCCCA GGGTCGTGCC GATGCCGTGG TGATTCAGCG GCTGGTGGCC
CTGCGCCTGC TTCAGGAGAC CGAACTGACC GGCCTTCGCA TTATCAATCA GCCGGTCGAA
GGGTTTCGCC AGGATTTCTG TTTTGCCGTG CGCGAGGGGG ACAGGGAGAC CCTGGCCCTG
CTCAACGAGG GCCTGGCCCT GGTCATGGCC GACGGCACCT ACCGGCATCT TCACGCCAAA
TGGTTTGCCG CCCTGGAGCT GCCGACCGGC CGCCGTATTG TGGTCGGCGG GGACCACCAG
TACCCGCCCT TTGAATATCT GGATGAGAAC GGCCGGCCGG CCGGATACAA TGTGGATCTT
TCCCGGGCCA TTGCCCGGGA AATGGGGCTG GACATCGAAA TCCGACTGGG TCCCTGGGCC
AAAATCGTTC AGGACATGGA GGAGGGCAGG GTTGATGTCC TTCAAGGTAT GTTTTACCTG
CCTGAACGGG ATTTGACATT CGACTTCACC CAGGCCCACA CAGTGCACCA TTACGTCAGC
ATTGTGCGCA AAGGCGAAGG CGATCCGCCG GCAACGCTCG ACGATCTGGC GGGCAAACGC
ATCGTGGTGC AGCGCAAAGA CGCGGCCCAC GACTTTCTTG TGGCCAAGGG CCTTGCCGGC
CAGCTTTCGC TTGTTGAGTC GCAGGAGGCG GTGTTGCGTG AGCTGGCTGA AGGAAAACAC
GACTGCGGCC TTGCGGTTCG AATCAGCTCC CTCTACCTGA TCGAAAAACA GGGATGGAAG
AATCTTGTTC TGGGGCGGCA GGAATTTCTT CCCCTGGACT ACTGTTATGC CGCGCCCAAC
GGGCACAAGG CGATCCTGGC CCAATTCAGC GAAGGGCTGA AAATTCTGGA TAAGAACGGC
GAATACCGCC GCATTCAGGA AAAGTGGCTG GGCGTTTATC AAAAACAGGC CATTGACGCG
CCTGCCGTTT TTAAATACGC GGCCGTTGTT CTTGTCCCCC TGCTGCTGAT GCTGCTGGCC
AGCCTGCTCT GGACATGGTT ACTGCGCAGA ACCGTGGCAC GCCGCACCGC CGAACTGGCC
GCTGTGTCGG AACGGCATCG GGCCATTCTG GGAGCGGCGC CGGACATCAT CATGGAGGTC
AATGCCGACA AAATTTACAC CTGGGCCAAT CCGGCAGGTG TAGCGTTTTT CGGAAACGAT
GTGATCGGCA GACCGGCTGC CGACTATTTT GTGGGAGAGC AAGAGACCTA TCAAAAGGTG
GACACCCTTT TCCACGGCGA TGAAAATGTG ATCTATGTTG AAAGCCTGCA AAGACGCAAA
GACGGCCAGG CCCGCCTGCT GGCCTGGTGG TGCCGCGTGA TCAAGGACAC AAACGGTAAT
GTGATGGGCG CGTTGTCCAC GGCCCGGGAT ATCACCGAGC AGAAAGAGAT GGAAGAGTCC
CTGCGCAAAA GCGAGCTTCA CTACCGGTCG ATTTTTGACA ACTCCATGGA CGCCCTGCTG
TTCACCTCGC CGGACGGCGC CATTCTTGAC GCCAATCCGT CGGCCTGCGC CATGTTCGGC
CGGTCCGTTG AAGAACTTAC CCGTCTGCGG AGAGAAGACC TGGTGGACAC TACCGACCCG
AACCTGGAAA AAGGGTTGGG CATACGCGCC CGCACCGGCA GAGCATACGG GGAGCTGGCC
ATGCGACGGG CCGACGGGTC CCTGTTTTCG GCGGATATCT CTTCCACGGT TTTCACCGAT
CCGGACGGCG TGAAAAAAAC CGTTATCATT GTGCGCGACA TCACGGAGCG CAAGCAGGCG
GAAAACGCGC TGCTTGAAAA AATGGATGCG CTTCAGCGGT TCCACGACAC TGTTGTGGAC
CGCGAAATGG TCATGGTTGA GCTGAAAAAA GAGATCAACG CCCTGCTGAA AAAAGCCGGT
CTTGCTGAAA AATACAGGAT TCGAAAAGCA TGA
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| Protein sequence | MMTRRKHSSF IIHHSSFFLA VAALLIFAAF FNKPVAAETV RPPLLSAAEI NYPPFSIVDD
QGRAGGFSVE LMRAALGAMG REVVFRTGPW PEVRRWLETG EVDALPLVGR TPERELLFDF
TVPYMSLHGA IVVRKETTGI QGLADLGGRT VAVMKGDNAE EFLQRKDRGI NIHSTTTFEE
ALRDLSQGRA DAVVIQRLVA LRLLQETELT GLRIINQPVE GFRQDFCFAV REGDRETLAL
LNEGLALVMA DGTYRHLHAK WFAALELPTG RRIVVGGDHQ YPPFEYLDEN GRPAGYNVDL
SRAIAREMGL DIEIRLGPWA KIVQDMEEGR VDVLQGMFYL PERDLTFDFT QAHTVHHYVS
IVRKGEGDPP ATLDDLAGKR IVVQRKDAAH DFLVAKGLAG QLSLVESQEA VLRELAEGKH
DCGLAVRISS LYLIEKQGWK NLVLGRQEFL PLDYCYAAPN GHKAILAQFS EGLKILDKNG
EYRRIQEKWL GVYQKQAIDA PAVFKYAAVV LVPLLLMLLA SLLWTWLLRR TVARRTAELA
AVSERHRAIL GAAPDIIMEV NADKIYTWAN PAGVAFFGND VIGRPAADYF VGEQETYQKV
DTLFHGDENV IYVESLQRRK DGQARLLAWW CRVIKDTNGN VMGALSTARD ITEQKEMEES
LRKSELHYRS IFDNSMDALL FTSPDGAILD ANPSACAMFG RSVEELTRLR REDLVDTTDP
NLEKGLGIRA RTGRAYGELA MRRADGSLFS ADISSTVFTD PDGVKKTVII VRDITERKQA
ENALLEKMDA LQRFHDTVVD REMVMVELKK EINALLKKAG LAEKYRIRKA
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