Gene Dole_3265 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_3265 
Symbol 
ID5696128 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp3924682 
End bp3928002 
Gene Length3321 bp 
Protein Length1106 aa 
Translation table11 
GC content59% 
IMG OID641265885 
ProductPAS/PAC sensor hybrid histidine kinase 
Protein accessionYP_001531145 
Protein GI158523275 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCAAAC CACCAAATCC TGCTGCTTTT CGCTGGATGG CGGTCTGTCT GGCCCCGGCC 
CTGCTGGCGA TCATTGCCGG CGGCGGCTGG TTTTACGATT TTCAGCACAA ACAGCAGCTT
TCGCGGGTGG AGGCAAACCT GACCGCCATA GCCAGGCTCA AGGCCGACCA GATCACCCGG
TGGCGGGCCG AACGGACAGG CGATGCAGCC ATGCTCATGG ACAGAAGGTC CTTGGTCAGG
GACATCGCCG ACTATTTCAC GGCACCCGCG GAAGCGATCG TGGGCGAGAT CAAAAGGCGG
TTTACGGACC TGCAGGCAAG CTACCACTAT GCCAATATTC TGCTGGTTGA CCCTGACGGC
AGGGTGCAGG TGAGCCTCAA CGGCCACGAT GTCATTGATC ATAACGGATT TGTCGGGGCG
CTTGCGACCG CGCTGTTCGA CCGCAGGCCG GTTTTTACCG AACTGCACAC AGAAAAGGAT
GGTTCCTCCC CCCATATCAG TGTGGTGGCG CCGCTTTATG CCAACGACCA GCCTCTTGGC
GCCATCATAC TGATCAGCAA CGCCCGCGCC TTTCTGTTCC CCCTGATTCA GTCCTGGCCG
GTGCCCAGCC GCAGCGCGGA AACCCTGCTG GTGCGGCGCG ACGGCGACCA CGTCCTGTTT
TTAAACGACC TGCGCCACCA GCCGAACTCG GGCTTAAAGC TTCGCATCCC CTTGAGCCGG
GCCGATCTGC CCGCGGTGAT GGCCGTGACC GGGTACACAG GGGTCACAAG GGCAAAGGAT
TACCGGAATG CCGATGTTGT GGCGGTCACC CTGCCGGTGC CGGGTTCCCC CTGGTTTATC
GTTTCAAAAA TGGATGAAGC GGAAGCGTTT GCCGAATGGC ATTTCCGGTC CGCCCTGATC
CTGGCCCTGA TTCTGGTGGG TAGCGGTATC ATCACGGTCC TGGGGGCTGC CTTCTGGCTG
CGGGAAAGAA AAAAACAGTA CCAGTTGCTT TTTCAGTCCG AGACGGACCG GCGTATGGAG
GCGGAACGCT ACCGCACCAC CCTGCGGTCC ATCGGCGACG CCGTCATTGT CACCGATGCC
GCCGGCCGGG TGACCCTGTT AAACCCCGTG GCCGAATCCC TTACCGGATG GAAAGAGCCG
GAGGCCAAAG GGCAACGGGT TGAAGATGTT TTTCGTATCG CCAACGAAGA GACCGGCGCA
ATCGTGGAAA GCCCGGTGGC CAGGGTGCTG CGGGAGGGCC GGGTGGTGGG GCTGGCCAAC
CATACGATTC TCATCGCCAG AGACGGGGCC AGGCGCCCCA TTGCCGACAG CGGCGCCCCC
GTCCGCGACG ATGCCGGTGA CATCATCAGT GTGGTGCTGG TGTTCCGGGA CCAGACGGAA
GAACAGGCCG CCCAGAAGGC GTTGCGGGAC TCGGAACAGA AATACCGCCG CCTGTATGAG
AGCATGACGG ACGCGTTTGT CGCCGTCGAT CTTGCTGGCC GGGTACAGGA ATACAACCCG
GCCTTCCAGT CCATGGTGGG ATATACCGAC AGAGAACTGC ACGAACTGAC ATACCAGGAC
CTGACGCCAG AAAAATGGCA CTCCCTTGAA ACCGCTGTCG TTGAAGACCA GATATTGAAA
CGGGGTTACT CGGATGTGTA TGAAAAAGAG TACCGCCGGG TGGACGGCAC TGTCTTTCCG
GTTGAGTTGC GGACGTTTCT GATCCGGGAT GAGGCCGCTT CACCCATCGG CATGTGGGCC
ATCGTGCGTG ACATCACCGG ACGCAAACAG GCCGAAGCCG CGCTTCTGGA AAAAACAGGC
CTGCTGCAGA GCATCACGGA CAACATCTTT GACATGGTCT CCATTGCCGA TGTTCAGGGA
CAGTTGCGGT TTATAAACGC CGCCCATCGT CAGACGCTGG GATATGAGCC GGATGCTTTG
ATCGGCACGG ACGTCATGTC CCTTGTTCAC CCCGACGACC GGGACCTCGT TGCGACCGCC
ATGACCGATG GCTTTTTAAG CCAGTCGCGA CACCGCATGG TTGAATACCG CTGTAAACGT
GCGGACGGTG GGTATGTCTG GGTGGAAACC GTTGGCGATG TTTTGAGAGA TCTGGATGGA
AACCCCAAAG ATCTGCTGTT CAGCTCCAGG GACATTTCCG TGCGCAAACA GGCCGAGGCC
GAAAAAGAAA GGCTTTCCGC CCAGCTTATG CAGGCACAGA AGATGGAGTC CGTGGGCCGG
CTGGCCGGAG GCGTGGCCCA TGACTTTAAC AACATGCTCA ACGTGATCCT GGGCCATGCC
GAACTGGCCC TGGACCAGGT CGGCCCTGAT GATCCCCTGC GAGAAGACTT GACGGAAATT
TTTGACGCGG CCCGCCGCTC CGCGGAGATC ACAAAACAAC TGCTGGCCTT TGCCCGCAGG
CAGATCATCG TGCCCAGAAC CGTCTACCTG AATGATACGG TGGAAAAAAT GCTGAAAATG
CTGCGGCGGC TGATCGGCGA GGATATCGAT CTGGCCTGGA AGCCGGGGTC GGGTTTATGG
CCGGTATACG CGGATGCCGC TCAGATCGAT CAGATTCTGG CCAACCTTTG CCTCAACGCA
CGGGATGCCA TTGACGGGAC GGGCAGAATC ACCATTGAAA CGCAAAACAC GGCATTGGAT
GAGGCCTACT GTGCCGGCCA TGCTGAATTT GTTTCCGGCG AGTATGTGGT TCTGTCCGTG
AGTGACGACG GCCGGGGCAT GGACAAAGTA ACGATGGACA ATCTGTTTGA GCCCTTTTTC
ACCACCAAAA ACGTCAACGA GGGCACCGGC CTGGGCCTGG CAACGGTCTA CGGCATCGTC
CGGCAGAACA ACGGCTTTAT CAACGTGTAC AGCGAGCCCG GCCATGGCGC CACCTTCAGA
ATCTACCTGC CCCGCCATGC GGGCACGCCG GACGAAACCG AAGCGCGGGA CACAACGGTG
CTGCCGGCCG GCAACGGCGA AACCGTTCTG GTGGTGGAGG ATGAGGCCGC GGTATTAAAG
CTTACCCAGA AGACACTTAC CGGCCTGGGA TATACCGTGC TGAAGGCCTT AAGCCCGCAA
GCGGCCCTGA AACTGGTGGA CAGCCATTCG AACCCCATCG ACCTGCTGAT CACCGATGTG
GTCATGCCGG GCATGAACGG CCGGGCTCTG TCGGAGAAGC TGAAGGCGCG TTATCCCACT
CTTCGGGTGC TTTTTATGTC CGGCTACACC GCCAATGTCA TCGCCCATCG CGGCATTCTG
GACGAGGGGG TCCATTTTAT CCAGAAACCG TTCAACAGAG TAGACCTGGC ACGGAAGGTG
AGAGAAGCGC TTTTGGAATG A
 
Protein sequence
MRKPPNPAAF RWMAVCLAPA LLAIIAGGGW FYDFQHKQQL SRVEANLTAI ARLKADQITR 
WRAERTGDAA MLMDRRSLVR DIADYFTAPA EAIVGEIKRR FTDLQASYHY ANILLVDPDG
RVQVSLNGHD VIDHNGFVGA LATALFDRRP VFTELHTEKD GSSPHISVVA PLYANDQPLG
AIILISNARA FLFPLIQSWP VPSRSAETLL VRRDGDHVLF LNDLRHQPNS GLKLRIPLSR
ADLPAVMAVT GYTGVTRAKD YRNADVVAVT LPVPGSPWFI VSKMDEAEAF AEWHFRSALI
LALILVGSGI ITVLGAAFWL RERKKQYQLL FQSETDRRME AERYRTTLRS IGDAVIVTDA
AGRVTLLNPV AESLTGWKEP EAKGQRVEDV FRIANEETGA IVESPVARVL REGRVVGLAN
HTILIARDGA RRPIADSGAP VRDDAGDIIS VVLVFRDQTE EQAAQKALRD SEQKYRRLYE
SMTDAFVAVD LAGRVQEYNP AFQSMVGYTD RELHELTYQD LTPEKWHSLE TAVVEDQILK
RGYSDVYEKE YRRVDGTVFP VELRTFLIRD EAASPIGMWA IVRDITGRKQ AEAALLEKTG
LLQSITDNIF DMVSIADVQG QLRFINAAHR QTLGYEPDAL IGTDVMSLVH PDDRDLVATA
MTDGFLSQSR HRMVEYRCKR ADGGYVWVET VGDVLRDLDG NPKDLLFSSR DISVRKQAEA
EKERLSAQLM QAQKMESVGR LAGGVAHDFN NMLNVILGHA ELALDQVGPD DPLREDLTEI
FDAARRSAEI TKQLLAFARR QIIVPRTVYL NDTVEKMLKM LRRLIGEDID LAWKPGSGLW
PVYADAAQID QILANLCLNA RDAIDGTGRI TIETQNTALD EAYCAGHAEF VSGEYVVLSV
SDDGRGMDKV TMDNLFEPFF TTKNVNEGTG LGLATVYGIV RQNNGFINVY SEPGHGATFR
IYLPRHAGTP DETEARDTTV LPAGNGETVL VVEDEAAVLK LTQKTLTGLG YTVLKALSPQ
AALKLVDSHS NPIDLLITDV VMPGMNGRAL SEKLKARYPT LRVLFMSGYT ANVIAHRGIL
DEGVHFIQKP FNRVDLARKV REALLE