| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_3265 |
|---|
| Symbol | |
|---|
| ID | 5696128 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 3924682 |
|---|
| End bp | 3928002 |
|---|
| Gene Length | 3321 bp |
|---|
| Protein Length | 1106 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641265885 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001531145 |
|---|
| Protein GI | 158523275 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAAAC CACCAAATCC TGCTGCTTTT CGCTGGATGG CGGTCTGTCT GGCCCCGGCC
CTGCTGGCGA TCATTGCCGG CGGCGGCTGG TTTTACGATT TTCAGCACAA ACAGCAGCTT
TCGCGGGTGG AGGCAAACCT GACCGCCATA GCCAGGCTCA AGGCCGACCA GATCACCCGG
TGGCGGGCCG AACGGACAGG CGATGCAGCC ATGCTCATGG ACAGAAGGTC CTTGGTCAGG
GACATCGCCG ACTATTTCAC GGCACCCGCG GAAGCGATCG TGGGCGAGAT CAAAAGGCGG
TTTACGGACC TGCAGGCAAG CTACCACTAT GCCAATATTC TGCTGGTTGA CCCTGACGGC
AGGGTGCAGG TGAGCCTCAA CGGCCACGAT GTCATTGATC ATAACGGATT TGTCGGGGCG
CTTGCGACCG CGCTGTTCGA CCGCAGGCCG GTTTTTACCG AACTGCACAC AGAAAAGGAT
GGTTCCTCCC CCCATATCAG TGTGGTGGCG CCGCTTTATG CCAACGACCA GCCTCTTGGC
GCCATCATAC TGATCAGCAA CGCCCGCGCC TTTCTGTTCC CCCTGATTCA GTCCTGGCCG
GTGCCCAGCC GCAGCGCGGA AACCCTGCTG GTGCGGCGCG ACGGCGACCA CGTCCTGTTT
TTAAACGACC TGCGCCACCA GCCGAACTCG GGCTTAAAGC TTCGCATCCC CTTGAGCCGG
GCCGATCTGC CCGCGGTGAT GGCCGTGACC GGGTACACAG GGGTCACAAG GGCAAAGGAT
TACCGGAATG CCGATGTTGT GGCGGTCACC CTGCCGGTGC CGGGTTCCCC CTGGTTTATC
GTTTCAAAAA TGGATGAAGC GGAAGCGTTT GCCGAATGGC ATTTCCGGTC CGCCCTGATC
CTGGCCCTGA TTCTGGTGGG TAGCGGTATC ATCACGGTCC TGGGGGCTGC CTTCTGGCTG
CGGGAAAGAA AAAAACAGTA CCAGTTGCTT TTTCAGTCCG AGACGGACCG GCGTATGGAG
GCGGAACGCT ACCGCACCAC CCTGCGGTCC ATCGGCGACG CCGTCATTGT CACCGATGCC
GCCGGCCGGG TGACCCTGTT AAACCCCGTG GCCGAATCCC TTACCGGATG GAAAGAGCCG
GAGGCCAAAG GGCAACGGGT TGAAGATGTT TTTCGTATCG CCAACGAAGA GACCGGCGCA
ATCGTGGAAA GCCCGGTGGC CAGGGTGCTG CGGGAGGGCC GGGTGGTGGG GCTGGCCAAC
CATACGATTC TCATCGCCAG AGACGGGGCC AGGCGCCCCA TTGCCGACAG CGGCGCCCCC
GTCCGCGACG ATGCCGGTGA CATCATCAGT GTGGTGCTGG TGTTCCGGGA CCAGACGGAA
GAACAGGCCG CCCAGAAGGC GTTGCGGGAC TCGGAACAGA AATACCGCCG CCTGTATGAG
AGCATGACGG ACGCGTTTGT CGCCGTCGAT CTTGCTGGCC GGGTACAGGA ATACAACCCG
GCCTTCCAGT CCATGGTGGG ATATACCGAC AGAGAACTGC ACGAACTGAC ATACCAGGAC
CTGACGCCAG AAAAATGGCA CTCCCTTGAA ACCGCTGTCG TTGAAGACCA GATATTGAAA
CGGGGTTACT CGGATGTGTA TGAAAAAGAG TACCGCCGGG TGGACGGCAC TGTCTTTCCG
GTTGAGTTGC GGACGTTTCT GATCCGGGAT GAGGCCGCTT CACCCATCGG CATGTGGGCC
ATCGTGCGTG ACATCACCGG ACGCAAACAG GCCGAAGCCG CGCTTCTGGA AAAAACAGGC
CTGCTGCAGA GCATCACGGA CAACATCTTT GACATGGTCT CCATTGCCGA TGTTCAGGGA
CAGTTGCGGT TTATAAACGC CGCCCATCGT CAGACGCTGG GATATGAGCC GGATGCTTTG
ATCGGCACGG ACGTCATGTC CCTTGTTCAC CCCGACGACC GGGACCTCGT TGCGACCGCC
ATGACCGATG GCTTTTTAAG CCAGTCGCGA CACCGCATGG TTGAATACCG CTGTAAACGT
GCGGACGGTG GGTATGTCTG GGTGGAAACC GTTGGCGATG TTTTGAGAGA TCTGGATGGA
AACCCCAAAG ATCTGCTGTT CAGCTCCAGG GACATTTCCG TGCGCAAACA GGCCGAGGCC
GAAAAAGAAA GGCTTTCCGC CCAGCTTATG CAGGCACAGA AGATGGAGTC CGTGGGCCGG
CTGGCCGGAG GCGTGGCCCA TGACTTTAAC AACATGCTCA ACGTGATCCT GGGCCATGCC
GAACTGGCCC TGGACCAGGT CGGCCCTGAT GATCCCCTGC GAGAAGACTT GACGGAAATT
TTTGACGCGG CCCGCCGCTC CGCGGAGATC ACAAAACAAC TGCTGGCCTT TGCCCGCAGG
CAGATCATCG TGCCCAGAAC CGTCTACCTG AATGATACGG TGGAAAAAAT GCTGAAAATG
CTGCGGCGGC TGATCGGCGA GGATATCGAT CTGGCCTGGA AGCCGGGGTC GGGTTTATGG
CCGGTATACG CGGATGCCGC TCAGATCGAT CAGATTCTGG CCAACCTTTG CCTCAACGCA
CGGGATGCCA TTGACGGGAC GGGCAGAATC ACCATTGAAA CGCAAAACAC GGCATTGGAT
GAGGCCTACT GTGCCGGCCA TGCTGAATTT GTTTCCGGCG AGTATGTGGT TCTGTCCGTG
AGTGACGACG GCCGGGGCAT GGACAAAGTA ACGATGGACA ATCTGTTTGA GCCCTTTTTC
ACCACCAAAA ACGTCAACGA GGGCACCGGC CTGGGCCTGG CAACGGTCTA CGGCATCGTC
CGGCAGAACA ACGGCTTTAT CAACGTGTAC AGCGAGCCCG GCCATGGCGC CACCTTCAGA
ATCTACCTGC CCCGCCATGC GGGCACGCCG GACGAAACCG AAGCGCGGGA CACAACGGTG
CTGCCGGCCG GCAACGGCGA AACCGTTCTG GTGGTGGAGG ATGAGGCCGC GGTATTAAAG
CTTACCCAGA AGACACTTAC CGGCCTGGGA TATACCGTGC TGAAGGCCTT AAGCCCGCAA
GCGGCCCTGA AACTGGTGGA CAGCCATTCG AACCCCATCG ACCTGCTGAT CACCGATGTG
GTCATGCCGG GCATGAACGG CCGGGCTCTG TCGGAGAAGC TGAAGGCGCG TTATCCCACT
CTTCGGGTGC TTTTTATGTC CGGCTACACC GCCAATGTCA TCGCCCATCG CGGCATTCTG
GACGAGGGGG TCCATTTTAT CCAGAAACCG TTCAACAGAG TAGACCTGGC ACGGAAGGTG
AGAGAAGCGC TTTTGGAATG A
|
|---|
| Protein sequence | MRKPPNPAAF RWMAVCLAPA LLAIIAGGGW FYDFQHKQQL SRVEANLTAI ARLKADQITR
WRAERTGDAA MLMDRRSLVR DIADYFTAPA EAIVGEIKRR FTDLQASYHY ANILLVDPDG
RVQVSLNGHD VIDHNGFVGA LATALFDRRP VFTELHTEKD GSSPHISVVA PLYANDQPLG
AIILISNARA FLFPLIQSWP VPSRSAETLL VRRDGDHVLF LNDLRHQPNS GLKLRIPLSR
ADLPAVMAVT GYTGVTRAKD YRNADVVAVT LPVPGSPWFI VSKMDEAEAF AEWHFRSALI
LALILVGSGI ITVLGAAFWL RERKKQYQLL FQSETDRRME AERYRTTLRS IGDAVIVTDA
AGRVTLLNPV AESLTGWKEP EAKGQRVEDV FRIANEETGA IVESPVARVL REGRVVGLAN
HTILIARDGA RRPIADSGAP VRDDAGDIIS VVLVFRDQTE EQAAQKALRD SEQKYRRLYE
SMTDAFVAVD LAGRVQEYNP AFQSMVGYTD RELHELTYQD LTPEKWHSLE TAVVEDQILK
RGYSDVYEKE YRRVDGTVFP VELRTFLIRD EAASPIGMWA IVRDITGRKQ AEAALLEKTG
LLQSITDNIF DMVSIADVQG QLRFINAAHR QTLGYEPDAL IGTDVMSLVH PDDRDLVATA
MTDGFLSQSR HRMVEYRCKR ADGGYVWVET VGDVLRDLDG NPKDLLFSSR DISVRKQAEA
EKERLSAQLM QAQKMESVGR LAGGVAHDFN NMLNVILGHA ELALDQVGPD DPLREDLTEI
FDAARRSAEI TKQLLAFARR QIIVPRTVYL NDTVEKMLKM LRRLIGEDID LAWKPGSGLW
PVYADAAQID QILANLCLNA RDAIDGTGRI TIETQNTALD EAYCAGHAEF VSGEYVVLSV
SDDGRGMDKV TMDNLFEPFF TTKNVNEGTG LGLATVYGIV RQNNGFINVY SEPGHGATFR
IYLPRHAGTP DETEARDTTV LPAGNGETVL VVEDEAAVLK LTQKTLTGLG YTVLKALSPQ
AALKLVDSHS NPIDLLITDV VMPGMNGRAL SEKLKARYPT LRVLFMSGYT ANVIAHRGIL
DEGVHFIQKP FNRVDLARKV REALLE
|
|---|
| |