Gene Dole_3264 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_3264 
Symbol 
ID5696127 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp3921262 
End bp3924666 
Gene Length3405 bp 
Protein Length1134 aa 
Translation table11 
GC content60% 
IMG OID641265884 
ProductPAS/PAC sensor hybrid histidine kinase 
Protein accessionYP_001531144 
Protein GI158523274 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCACCG ACACACCCGC CCCTGTTACC ACCCGCCCTG AAAGTCCCTT TGGAAAGCGA 
GGCCTTTTGT CCGGCCTGGC CGGTGTTCTG GCCCTGCTGC TGGTAGCCGG AGCCATGCTC
ATCTGGCAGA CGGTGCGCCA TGCAGACGGC AGCATGCGCG CCGACCTGCT GGAGCAGGCG
CGACTGGTGG CCGGCGCACT GGACCTGGAA AAGGTTCTGG CCCTTTCCGG CACTGCCGCC
GATCTTGAGG CCCCCGCCTA CCGGGATATC AAAAAGCAGC TGGGTGCCCT CCATCGCACC
CATGGCCGGG CCCGATTTAT CTATCTGCTG GGACAGCGGC CGGATGGGGG CCTGTTTTTT
CTGGCAGACA GCGAGCCTGC CGAATCACAA AATCTTTCCC CTCCGGGACA GCCCTATGAA
GAGGCGTCCG CCGGTCTGCT GCGCGTCTTT GCCACGGGAA CCGGAACCGT GGAAGGCCCT
GAGGCAGACC GCTGGGGCAC CTGGGTCTCC GCCCTGGTGC CGCTGTTCGA GCCGCAAACC
GGCCGGGTGG CGGCCGTGCT GGGAATGGAT GTGGACGCCC GCCGCTGGCA AGGGGCCGTG
CTGGCCGCGG CGGCATGGCC GTCGGTGCTG ACAGCGGCCT TGATTGCGTC CCTGGCCTTA
AGTTTCGCCC TGGCTGTCGC CCGTCGCCGG ACCCTGAATT TCCAGACCGA AATTGCCCGG
GCCCGGAAGC AGGCCGAACA GGCCGCAGCG GAAACCGAAA GAGAGCGCCG GCTGCTGCAA
ACGCTGCTTC ACGCCATACC GGCCCCGGTG TTTTTCAAGG ACAGAAACGG CCTTTACCTG
GGATGCAATC CGGCCTTTGA AGCCATAACC GGCAAAACCG AAGCAGAAAT CCTCGGCAAA
CGGCCCCATG AAATCTGGCC TGAAAATTAC AGTTCGACCT ATCGGGACAA AGATCTCGAA
CTTCTGAAGA CCGGCGGAAA GCAGCAGTAC GAATACCAGT ACGCGGGTCC GGACGGCACG
GCCCGGGATG TGGTGTTCTA TAAGTCCGCG TTCCAGGATT CGGCCGGCCG GGTGGACGGC
CTTGTGGGTG TGATGCTCGA CATCTCCGAG CGAAAGCAGG CCGAAGAAGC CCTGCGCGAA
AGCGAAAAAA AATACCGCGT GCTGATTGAC GGGTTGCCGG ACATCGTGAT GCGCTTTGAC
CGTGACGGGC GGCACCTGTT TGTGTCCGAT AACATCAGTG ATCTCATCGA CCTGCCGGCG
GCCCGGTTCA TCGGCAGGAC ACACCGCGAA CTGGATTTCC CGGAACCGGC GTGCCGTTTC
TGGGAAAAGG CCATCCAAGG CGTATTTGAC AGCAAAACGC CTTTTGAGAC CGAGTTCCGC
TTTCAGGGAA AACAGGGAGA GGTGGTTTTC AACTGGCGCC TGATCCCGGA ACAAGACGCC
CACGGGGAGA TTCGGTCCGT GCTCTCCTTC TGCCGGAACG TGACCGCACA TCGCAAGATC
GAACAGGACT ATCATACCCT GTTTCGCGAG ATGCTCGACG GCTTTGCCCT GCACGAAATC
ATCCGCGACG CCGCGGGCCG GGCGATTGAC TATCGGTTTC TGGCCGTCAA TCCGGCTTTT
GAGCGCATGA CCGGACTTGC GGCCAGGGAG ATTGTGGGCA AGACCGTGCT CGAGGTTTTG
CCGGACACCG AGCCGTACTG GATCGAAAGA TATGCCGGCG TGGCCGAAAC GGGGGACCCT
GTCTTTTTCG AGGAGCACGC CAGAGCGTTG GAAAAATACT TTGCGGTGAC GGCTTTTCGT
CCCGCGCCCA ACCAGTTCGC TTCCATCTTT CAGGACATCA CCGAACGCAA ACAGGCCGAG
GAGGCGCTAC GGAAAAACGA GGAACGGTAC CGATCCGTCC TGGACAATAT TGAAACCGGT
TACTATGAAG TGGATCTGGC CGGAAACCTT ACCTTCTTCA ACCCGTCTCT GTGCAAAATT
CTGGGTTATC CAAGTGACGA GGCCATGGGC ATGAATTACA AAAAATATAT GGCCCCGGAA
ACCGCTAAAA AAGTGTTTCA AATATTCAAT CACGTATTTA GAACCGGAGA AACGGATAAA
TCCTTTGAGT GGACCCTTAT AAAGAAAAAC GGGGAAAAAT GCCATGTGGC CACCTCTATT
TCCTTAATGA GAGACACCGA CGGCAACCCG ATCGGTTTTC GGGGAATTGA GCGCGATATC
ACCGAACACA AACAGGCCGA GGCCGAGAAG GAAAAACTTT CGGCCCAGTT GATCCAGGCG
CGGAAAATGG AGGCCGTGGG CCGCCTGGCC GGGGGCGTGG CCCATGATTT TAACAACATG
CTCAATGTTA TCGTGGGCCA CGCGGAACTG GCCCTGGACG AGACAAGGCC GGATGACCCG
GTTTGTGAAA CCCTCAATGA AATTCTGGGC GCGGCCCGCC GCTCCGCCGA GATCACCCGC
CAGCTTCTGG CCTTTGCCCG CAAGCAGACG ATCCACCCCC GGGTGCTGGA CCTGAACGCC
ACCATGGGGG ACAGACTCAA GGTGCTGCAA CGGCTTCTCG GCGAGGATGT CGACATGGCC
TGGACCCCCG GACCGGACCT GTGGCCGGTT CGAATGGACC CCTCCCAGAT TGACCAGGTG
ATGGCCAACC TCCTGGACAA CGCCCGGGAC GCCATCGACG GAGTGGGCCG CGTTGAGATT
GAAACAGACA ATGTCCGGCT CGGCCCGTGG GACTGCGTGG ACTGCCCCGG CCTGGTGCCC
GGTGAATACG TGCGGCTCTC TGTTCGCGAC ACCGGCCGGG GCATGGACAG AAAAACCCTG
GACAACCTGT TTGAGCCTTT TTTTACCACC AAGGGCGTGG GCGAAGGCAC CGGCCTGGGT
CTGGCCACGG TTTACGGCAT CATCAAGCAA AACAACGGAT TCATCTACGC GGCCAGCCGG
CCCGGACAGG GCACCGCCTT TACCGTCTAT CTTCCCCGCC ACGCGGGCGC GCCGGAACCG
GCCCCATCCG CCAAAGGGCA AAAAGCCCCG GCCGCCAGCG GCGGAACCGT GCTGGTGGTG
GAAGACGAGG CCTCGGTGCT GAAGCTTGTT CAAAGAGTAC TGGAGCGGCT GGGCTATAAC
GTGCTGACGG CCCTCGGTCC GGCCCGGGCC ATAACAATGG CGGACGAACA TCAGGGCACC
ATTGACCTTC TGATCACCGA TGTGATCATG CCGGAGATGA GCGGCCGGGA CCTGGCGAAA
ACGATGAAAA AGCGGTTTCC GGATCTTCGG GTGCTCTACA TGTCCGGCTA CACGGCCGAT
ATCATCGGCC GGCGGGGAGA GCTGGAAGCC GATGTGAACT TTATTCAGAA GCCTTTTTCC
AACCAGGACA TGGCGGAAAA GGTGAGAGAC GCGCTGAAGG AATAA
 
Protein sequence
MTTDTPAPVT TRPESPFGKR GLLSGLAGVL ALLLVAGAML IWQTVRHADG SMRADLLEQA 
RLVAGALDLE KVLALSGTAA DLEAPAYRDI KKQLGALHRT HGRARFIYLL GQRPDGGLFF
LADSEPAESQ NLSPPGQPYE EASAGLLRVF ATGTGTVEGP EADRWGTWVS ALVPLFEPQT
GRVAAVLGMD VDARRWQGAV LAAAAWPSVL TAALIASLAL SFALAVARRR TLNFQTEIAR
ARKQAEQAAA ETERERRLLQ TLLHAIPAPV FFKDRNGLYL GCNPAFEAIT GKTEAEILGK
RPHEIWPENY SSTYRDKDLE LLKTGGKQQY EYQYAGPDGT ARDVVFYKSA FQDSAGRVDG
LVGVMLDISE RKQAEEALRE SEKKYRVLID GLPDIVMRFD RDGRHLFVSD NISDLIDLPA
ARFIGRTHRE LDFPEPACRF WEKAIQGVFD SKTPFETEFR FQGKQGEVVF NWRLIPEQDA
HGEIRSVLSF CRNVTAHRKI EQDYHTLFRE MLDGFALHEI IRDAAGRAID YRFLAVNPAF
ERMTGLAARE IVGKTVLEVL PDTEPYWIER YAGVAETGDP VFFEEHARAL EKYFAVTAFR
PAPNQFASIF QDITERKQAE EALRKNEERY RSVLDNIETG YYEVDLAGNL TFFNPSLCKI
LGYPSDEAMG MNYKKYMAPE TAKKVFQIFN HVFRTGETDK SFEWTLIKKN GEKCHVATSI
SLMRDTDGNP IGFRGIERDI TEHKQAEAEK EKLSAQLIQA RKMEAVGRLA GGVAHDFNNM
LNVIVGHAEL ALDETRPDDP VCETLNEILG AARRSAEITR QLLAFARKQT IHPRVLDLNA
TMGDRLKVLQ RLLGEDVDMA WTPGPDLWPV RMDPSQIDQV MANLLDNARD AIDGVGRVEI
ETDNVRLGPW DCVDCPGLVP GEYVRLSVRD TGRGMDRKTL DNLFEPFFTT KGVGEGTGLG
LATVYGIIKQ NNGFIYAASR PGQGTAFTVY LPRHAGAPEP APSAKGQKAP AASGGTVLVV
EDEASVLKLV QRVLERLGYN VLTALGPARA ITMADEHQGT IDLLITDVIM PEMSGRDLAK
TMKKRFPDLR VLYMSGYTAD IIGRRGELEA DVNFIQKPFS NQDMAEKVRD ALKE