Gene Dole_3254 details

Gene Information

• Locus tag: Dole_3254
• ID: 5696117
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfococcus oleovorans Hxd3
• Kingdom: Bacteria
• Replicon accession: NC_009943
• Strand: +
• Start bp: 3899980
• End bp: 3906336
• Gene Length: 6357 bp
• Protein Length: 2118 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 641265874
• Product: hypothetical protein
• Protein accession: YP_001531134
• Protein GI: 158523264
• COG category: [N] Cell motility
• COG ID: [COG1360] Flagellar motor protein
• TIGRFAM ID: [TIGR01451] conserved repeat domain

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.55976
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACCAGA CGACCATGCG CATTAAAGGA CAGGCGGCCC CGCCTTCCGG CAATTTTGCC 
GGAAACGGCG GGGCTTTGCC TGTTTCTGCG CGCATGGCCG CTGTGCGGAA CAGGGCTGCC 
GCGAAAGCGG CGGCCCTGGC CCCGCAAATC CATTTAACGC GTCTTTACGC GCTGATCATA 
ACGGCCCTGG TCCTTTTTTG CGCCACCGCA TGGGCCGGAC CGAACGATAT TTCCAACACC 
GCCGGCATCA CCTTTAACGA CGGTGTGACG GTATCGTCCA ATTCCGTTGT TCTGACCCGG 
GCAGAAGCCG TGGACTGCGC CGTTGAAAAA AGCGCGGACA CGGACCGGGC CATGGAGGGG 
AACAATGTCT CCTACCGGAT CACCGCGATC AACAACAGCG ATGTTCCCAT CATCGGGCTG 
GTGGTAAGAG ACGACCTTCC TGAAGGGGTC TCTCTTGTGG AAACCAGCCC AACGGCGACG 
TCCGTTGAAG ACCGGCGCCT GACCTGGAAC ATCGGAAACC TTGCACCCCG GCAGCAGACC 
GTTGTCACGG TGACGGTACT GGTGAATGAA AACAGCGGCT TTGCCGGCCA AACCCTTGTC 
AACACCGCCG CAGCCACAAC GGCCCAGGCC GACAGCGACC TGAACAACAA TATTGCCACG 
GCCGGGGTCA TGGTTCGCAC GCCGGGCGTG ATTGAGCTGC TGCGCTACGC TCCGTCGGTA 
TCAACGGCTG AATCCGTCAA TGTCGCGGTT GCCGCCTATT CTTCCAACGG CTCCCTGTCC 
GGCCCCTTTA GCGCACTGGC GCCGCCCCTG TCGGGCCAGA CCCCCATTGA TCTTTCCCAG 
CCGGTTCCGC TGATTGACGC CGATGTTTTT CACCAGGGCG ATCCCATATT CATCCGCGTG 
ACCGACCGTG ACCGGAACAC CGACCCGAAC ACCGTGGAAA CGATTGTCAT AAAAATTTCA 
GGCACCGGCC CGGCCGGCAC CGACACCGAG GTGATTCTGC TCACCGAGAC CGGGCTGAAC 
ACCGGCGTGT TCACGGGCTA TGTGATGTCT GCGCCCGGAA CCGCGCCGGG CAATTATGAC 
GGCCGGCTTG CCGTCTCCTC CGGCACCACG ATTACCGCCG TCTACCACGA CACAGAGGAC 
GGGCCCGAGG CCGTGGTGGA TGACAGCGCC CTGGTGGACC CCTACGGCAT TGTGTTTGAC 
AGTTCCACCG GAAAACCGGT GGATGGGGCG GTTGTCACGA TTGTCGAGGC AGCGGCCGGT 
GTGTCGGCGG CCGTGGGCGC CCCTGCCCGG GTCCTGGGTG AAGATGGTGT CAGCACCTAC 
CCTTCCACCC TTATATCCGG GGCTGCTGTC ACAGACAGCG GCGGCAACCG GTATGATCCG 
CCGGCGGGCG GTTTCCGGTT TCCCCTGATT TTACCGGGAA ACTACCGTTT GCGTATCACG 
CCGCCGGAAG GCTACAAGGC CCCGTCCATC GTGGCCGACG CCGACCTGCA GGCCCTGCCA 
GGCGGCCCTT TTGTCATTGT TAAGGGGTCC AGGGGAGAGT CCTTCCGGGT CGATCCCGGG 
CCGCCGGTCC ACCTGGATAT TCCCATCGAC CCCATCGTGT ACGCGCTTTA CGTGACCAAA 
CAGGCGAATA AAGATACGGC CGCGGCAGGC GATTTTGTGG CCTATACCCT GACCGTGGAA 
AACACGTCGG ATGATCCGAT TTCAGGCATC GTGCTGAACG ACAAGCTGCC CCCGGGATTT 
CGGTATCAGA ACGGCTCGTC CCGGCGGGAC AAGGCGAAAA CAGCCGATCC GGCCATCGCT 
TCCGACGGCC GGACCCTGAC CTTTTCTATC GGCACCCTGG CCTCCCATGA AAAGACAACG 
ATTGTATATG TTGTCGAAGT CTCGGCCGGG GCAAGAAAGG GCAAGGCGGT CAACCGGGCC 
GTGGCCGTGG GCGACACCGC GTCGTCTCTG CCGGCATCGG CCACCGTTGA GGTCAAAGAG 
GACCTGTTCC GCGGCAAGGC CATTATCATG GGCCGGGTAA TCGCGGACAA CTGCGAAAAC 
AAGCCGGTTG ACGGCAACGA CGGGGTTCCC GGCGTCAGGG TCTACCTGGA GGACGGCACC 
TTTGCCGTCA CCGACGACAA CGGCATGTAC CATTTTGAGG GGGTTGTGCC CGGCACCCAC 
GTGGTCCAGA TGGATCTGGT TACGATTCCG GAAAGGTATC AGGTTGTGGC CTGTGAAGAG 
AACACCCGGT TTGCCCAGAC CCCGTACTCC CAGTTTGTGG ACCTTCAGGG CGGCACCCTG 
TGGCGGGCCG ATTTTCACGT GGCCACAAAA CCCCGGCCCG AAGGCGAGGC CCGGCTCTAC 
CTGGAAAGCA CCCGCGCCGG GGACCAGGCC TCTTTTTATG CCCGGCTTTC CGGTGACGGC 
GTGGCCCTGG ACAACCTCCG GCTGACCCTG CTGCTGCCGG AAGGCGTCAT CTATACCGAA 
GGCTCCAGCC GCCTTTCAGA CGGCACACCC ATCACCCCCA TGGTGACGGA CAACGCGCTG 
ACCTACCGGC TGGGGGATGT GCCTGCCGCA TGGGAGAAGC GAATCACCCT GTCGGCCACC 
ATACGCAGCA TCTTCACCAA CGGCGAGGAA AGCCACATTG TCACAAAAGG GCTGCTCACC 
TTTAACACAC CGGCCCAGAA AAACCAGCGG ACCCCGGTGG TGGAAAGCCT TCTGGCCGTA 
AGATTTCATA ACGCAATCAA CCTGGAGGCC GATCAACGGC CCCTGTTTGC GTCCTTTGGC 
ACGCAACTGA CCGAAAACGA CAAGGAACAG GTCCGCGCCC TGCGGCAGTC CCTTGCCGGC 
CGGCGGATCA AACGCATCAT CGTCACCGGC CACACCGACA ACCAGCCCAT CCGCGCCCGC 
AGCCGCCATA TTTTTGCCGA TAACGACGCC CTCTCCCTGG GCCGGGCCCA AAGCGTGGCC 
ACTTATCTGC AAACCATTTT AAACCTGCCG CCGGAACGCA TCGAGGCCGA GGGAAAGGGC 
GACCGCGAGC CGGTGGCCTC CAACGCCACT GAAGCCGGCC GGGCAGAAAA TCGCCGGGTT 
GCCGTGGCCG TGGTGTCGGA ATCCATTCGT CCTGACACGG CGGCCTCCAA CGATGCCGAC 
CTGGTTTCCG TGGCCACCCG GGGTGCCCGT CCGGGTGAAG ACCCGGCTGC CGGGAAGAAG 
CCTTATTCAC TCTCTGACGC GGAGGCCCAA ACCATGCCGG AAATCAGCAG GGCCTTTGTC 
GAGTCCCTGT CCCGCGACGA CCGGCCCCTG GCCTGGGTCT GGCCGGAAGA CGGCTTTCTG 
CCGGCAACAC CCGGCATCAA AATCGCCGTC CGCCACCGGG CCGGCACCGT GCCCCGGCTG 
CTGTTAAACG GCCATGAGGT GAGCCGCCTC AATTTTGAAA AAACCGTATC CGACCGGGCC 
GGCACCGTGG CGGTGAGCAC ATGGCGCGGC GTCGATCTGA AGGAAGGGGA CAACCGGTTT 
GAAGCCCTCT GGCAGGACCC GGATACAGCA ACACCGACGC GCATTGAAAG GGTCATCCAC 
TATTCCGGCC CCCCGGTGCG CGCCGACCTT GTGGTTGAAA AATCCCGGCT GATCGCCGAT 
GGTTCCACAC CCCCGGTGAT CGCGGTGCGG CTGACCGACA AGGACGGATT CCCGGCCCGA 
ACAGGTGTGG TGGGCCGCGT GAATGTTCTG CCCCCTTACA CGGCCCTGGC GGAAACACAG 
ACCATGCAGC AGGCCCCGCT CACCGGGGCC GTGGAAGATG CTCCCGGGTA CCGGGTGGAA 
GCAGACGGCA TGGCCTATAT CCCGCTTGAC CCCTCGGCCC CGACCGGAAA AGCCACCCTG 
GAGTTTACCT GTTCCGACGG CACGAAAACC GTGAGTGCAT GGCTGATCGC GCCTGACCGG 
GAGTGGATCC TGGTGGGTCT GGCCGAAGGC ACCGTGGGCT ACAACACCCT CTCCGGCCAC 
GCGGAAAACC TGGCCGCTGC CGATGTGGAT GACGAGATTT ACGAGGACGG GCGTATCGCC 
TTCTTTGCCA AAGGCAGAAT CAAGGGCGAA TGGCTCCTGA CCCTGGCCGC GGACACCACC 
GAGGAAAAGG CCGCCGGTGA AACCGAGATG TTTCGCACCA TCGACCCGGA CACCTACTAC 
ACCCTGTACG GTGATACGGT ACAGCAAGGG TACGAGGCCC CCAGCCGCAA GCGGCTCTAC 
GTGAAAATCG AGAAAAAACA GTTCTACGCC CTGTTCGGCG ACTATGCCAC GGATTTGACC 
GTCACCGAAC TGGCCCGGTA CAACCGGAAC GCCACCGGTA TAAAGTCGGA ATTTGAAAAT 
GACCGGTTTA CCTACACGGC TTTTGTCAAC GAGGCGGATT CCGGTTTTAT AAAGGACGAA 
ATCCAGGGCA ACGGCACCTC CGGTCTTTAC CACCTGTCCG GCAACGACAT TCTGCCCAAC 
TCGGAAACCA TCATAATAGA GACCCGGGAC CGGTTTAAAA GTGAGGTAAT CCTTGAGTCA 
AGGCCCCTGA CCCGGCACGT GGACTATCAG ATCGACTACG ACACCGGCGC CCTTTTCTTC 
AAGGAGCCGG TCTTCAGCAG GGACGACCGG TTCAACCCCA TATTCATTGT CGCCGATTAT 
GAAACAGAGG CCGGTGACTC GGGCGAACTC AACTACGGCG GCCGGGCCGC AGTCAAATTC 
CTGGACGGCC GTGTCGAGGT GGGAGCCTCT CATCTTCACG AAGGCGGCAC AGGCGCTGAA 
GGTGATCTTT CCGGTGCGGA CGCCACGGTC CGGCTGAGCA AGAACACCAC GGTCCGGGCC 
GAAGTGGCAA CCAGCGACAA GCAGTCCGGC ACCGAACAAA AAGAGGGCAA CGCCTACCTG 
GCCGAGATGG TCCATGGTTC AGAAAAACTG GCGGGCAAGC TCTATGTGCG GGAGCAGCAG 
CCCGGGTTCG GCCTGGGCCA GCAGAATGGA TCGGAAGAGG GCACCCGCAA AATCGGCGGT 
GAGGCCGCCT ACCAGGCCAC GTCCAGGGTG GGGGTCAATG CCGAGGTCTA TCGCCAGGAA 
AACCTGACAA CCGACGCCAA ACGGGACGTG GCCGAGGCCG GTGTGAGTTA TGCCACCGGC 
AGGGACGCTT CCCTTCGAGC CGGCCTGCGC CATGCCGAGG ACCGCTTTTC CGACGGCACA 
GTCAACCGGA CCGACCAGGT GCTGGCCGGG GCCACCACAA AGACGGCCAA CGACAAACTG 
ACCCTTCGGG TGGACCATGA GCAGACCTTA AACCCGGACG AAAACGCCAA CGCCGATTTT 
CCCACCCGCA CCACCCTGGG GGCCGACTAT GCGGTGACTG AAAAAACCAC GCTTTTTGCC 
GAGCAGGAGT TTACCTTCGG CGAAAACGAA GATACTGAAA CCAGCCGGGC CGGGGTCAAG 
ACCTCCCCCT GGACCGGGGG CAGCCTCTCT TCATCCGTGG GCAGGGAGAC GGACGAAAAC 
GGCGCCCGGG TGTTTGCCGG CATGGGCCTT TCCCAGAAAT GGCGGATCAA CGACTACTGG 
AGCGCCGACG GCGGCATCGA CCACAGCCGG ACCCTCAAGG ACCCCGGCAA TACGCCCCTC 
AATATCAATG TGCCCCCAGC CTCGGGCACG GCCGACGGCA ATGACTTTAC CGCCTTCTCC 
CTGGGCACCG CCTACACTCA GGAAACATGG TCCGCAAACA ACCGGGTCGA GTTCCGCCAT 
TCGGAAGTCG ACGACAAATA CGGCCTGATG ACCGGCATCT TCGGCGAGCC GAAAGAGGGG 
CTGGGGCTCT CTTCCAGTTT CAGGCTGTTT CGCACGGAAA CGGTTTCCGG CACCGACACC 
ACAGCGGCAA ACCTGCGGTT CGGCCTGGCC CGCCGGCCCA GAAACGCGGA GTGGATCGTT 
TTAGACCGGC TGGACCTGGT GTATGAAGAT GAAACCGGCA CGTCTTCGGC ATTTGAAAGC 
CGGCGCATCA TCAACAACTT AAACGCCAAC TTCAAGCCGA ACGGAAAATT CCAGGTATCC 
TTGCAGTATG GCGCCAAGTA CGTGCTGGAA ACCGTGGAAG ACAATGACTA CAGCGGCTAC 
ACGGATTTAA CCGGCATCGA AGCCCGGTAC GACATCACCC GCCGGTTTGA CGTGGGCATG 
CACGGCGGCA TGCTCCACTC CTGGAACAGC GGCCAGATCG ACTACCTGGC CGGGGCGTCA 
CTGGGCTGCG ATATTGTTAA AAACTTCTGG CTGAGTTTCG GGTATAATCT TACGGGCTTT 
ACCGACAAGG ATTTTTCAGC GGCCGGGTTT ACGGCCCAGG GGCCCTTTAT TCAGTTCAGA 
CTCAAATTCG ACCAGGCCAC TGTCAAGGAA GCGGTGGAGC TGCTGGACAA ACACTGA 

 

Protein sequence

MNQTTMRIKG QAAPPSGNFA GNGGALPVSA RMAAVRNRAA AKAAALAPQI HLTRLYALII 
TALVLFCATA WAGPNDISNT AGITFNDGVT VSSNSVVLTR AEAVDCAVEK SADTDRAMEG 
NNVSYRITAI NNSDVPIIGL VVRDDLPEGV SLVETSPTAT SVEDRRLTWN IGNLAPRQQT 
VVTVTVLVNE NSGFAGQTLV NTAAATTAQA DSDLNNNIAT AGVMVRTPGV IELLRYAPSV 
STAESVNVAV AAYSSNGSLS GPFSALAPPL SGQTPIDLSQ PVPLIDADVF HQGDPIFIRV 
TDRDRNTDPN TVETIVIKIS GTGPAGTDTE VILLTETGLN TGVFTGYVMS APGTAPGNYD 
GRLAVSSGTT ITAVYHDTED GPEAVVDDSA LVDPYGIVFD SSTGKPVDGA VVTIVEAAAG 
VSAAVGAPAR VLGEDGVSTY PSTLISGAAV TDSGGNRYDP PAGGFRFPLI LPGNYRLRIT 
PPEGYKAPSI VADADLQALP GGPFVIVKGS RGESFRVDPG PPVHLDIPID PIVYALYVTK 
QANKDTAAAG DFVAYTLTVE NTSDDPISGI VLNDKLPPGF RYQNGSSRRD KAKTADPAIA 
SDGRTLTFSI GTLASHEKTT IVYVVEVSAG ARKGKAVNRA VAVGDTASSL PASATVEVKE 
DLFRGKAIIM GRVIADNCEN KPVDGNDGVP GVRVYLEDGT FAVTDDNGMY HFEGVVPGTH 
VVQMDLVTIP ERYQVVACEE NTRFAQTPYS QFVDLQGGTL WRADFHVATK PRPEGEARLY 
LESTRAGDQA SFYARLSGDG VALDNLRLTL LLPEGVIYTE GSSRLSDGTP ITPMVTDNAL 
TYRLGDVPAA WEKRITLSAT IRSIFTNGEE SHIVTKGLLT FNTPAQKNQR TPVVESLLAV 
RFHNAINLEA DQRPLFASFG TQLTENDKEQ VRALRQSLAG RRIKRIIVTG HTDNQPIRAR 
SRHIFADNDA LSLGRAQSVA TYLQTILNLP PERIEAEGKG DREPVASNAT EAGRAENRRV 
AVAVVSESIR PDTAASNDAD LVSVATRGAR PGEDPAAGKK PYSLSDAEAQ TMPEISRAFV 
ESLSRDDRPL AWVWPEDGFL PATPGIKIAV RHRAGTVPRL LLNGHEVSRL NFEKTVSDRA 
GTVAVSTWRG VDLKEGDNRF EALWQDPDTA TPTRIERVIH YSGPPVRADL VVEKSRLIAD 
GSTPPVIAVR LTDKDGFPAR TGVVGRVNVL PPYTALAETQ TMQQAPLTGA VEDAPGYRVE 
ADGMAYIPLD PSAPTGKATL EFTCSDGTKT VSAWLIAPDR EWILVGLAEG TVGYNTLSGH 
AENLAAADVD DEIYEDGRIA FFAKGRIKGE WLLTLAADTT EEKAAGETEM FRTIDPDTYY 
TLYGDTVQQG YEAPSRKRLY VKIEKKQFYA LFGDYATDLT VTELARYNRN ATGIKSEFEN 
DRFTYTAFVN EADSGFIKDE IQGNGTSGLY HLSGNDILPN SETIIIETRD RFKSEVILES 
RPLTRHVDYQ IDYDTGALFF KEPVFSRDDR FNPIFIVADY ETEAGDSGEL NYGGRAAVKF 
LDGRVEVGAS HLHEGGTGAE GDLSGADATV RLSKNTTVRA EVATSDKQSG TEQKEGNAYL 
AEMVHGSEKL AGKLYVREQQ PGFGLGQQNG SEEGTRKIGG EAAYQATSRV GVNAEVYRQE 
NLTTDAKRDV AEAGVSYATG RDASLRAGLR HAEDRFSDGT VNRTDQVLAG ATTKTANDKL 
TLRVDHEQTL NPDENANADF PTRTTLGADY AVTEKTTLFA EQEFTFGENE DTETSRAGVK 
TSPWTGGSLS SSVGRETDEN GARVFAGMGL SQKWRINDYW SADGGIDHSR TLKDPGNTPL 
NINVPPASGT ADGNDFTAFS LGTAYTQETW SANNRVEFRH SEVDDKYGLM TGIFGEPKEG 
LGLSSSFRLF RTETVSGTDT TAANLRFGLA RRPRNAEWIV LDRLDLVYED ETGTSSAFES 
RRIINNLNAN FKPNGKFQVS LQYGAKYVLE TVEDNDYSGY TDLTGIEARY DITRRFDVGM 
HGGMLHSWNS GQIDYLAGAS LGCDIVKNFW LSFGYNLTGF TDKDFSAAGF TAQGPFIQFR 
LKFDQATVKE AVELLDKH