Gene Dole_3227 details

Gene Information

• Locus tag: Dole_3227
• ID: 5696090
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfococcus oleovorans Hxd3
• Kingdom: Bacteria
• Replicon accession: NC_009943
• Strand: +
• Start bp: 3868985
• End bp: 3871012
• Gene Length: 2028 bp
• Protein Length: 675 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 641265847
• Product: ABC transporter-related protein
• Protein accession: YP_001531107
• Protein GI: 158523237
• COG category: [V] Defense mechanisms
• COG ID: [COG1132] ABC-type multidrug transport system, ATPase and permease components

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACACCGC CTGCCCGTTC CGGAAAAGAC CGTTTTGCCG AAGCCACCCT GGGCAAACGC 
CGGGACACGG CCCTGATGGT CCGGCTGCTG CCCTTTATCC GGCCCCAGGC CGGGTGGCTG 
GCCCTGGCCG TTGGCGTGGT GATGCTGGTG ACCCTGTTCG ACCTTTCCAT TCCCTATATT 
ACCAAGGTGG CCATCGATTC TTACATGGTG CCCGGAACCG TGGTGTCCGA GGCAGGGGCC 
GGTTCAGGTG AAAAGGGGCG CTACCTGGTG GTGGACCTGT CCGACCCGGC AAAAAAGAAG 
GTGGTGAATC AATACCCCGG CCTGTTTGCC AGTGTCGATG GCCGGACCGC CCGCATTTCC 
ATGGAGCACC TGGAAAAGCT GGACAGGACC GATCTTGTCC TGCTGCGACA GGACGACATT 
CGCCGCCTGG CCCTGGCGGC CCTGCTGGTT CTGGGAGTGG CCGTGGCCAT GTTCGTGCTC 
AATTTTGCCC AGGTGATGAT CATGGAGTAC GCGGGCCAGC GGATCATGCA CAGCCTGAGA 
ATAAAGGTGT TTACCCATAT TCAGGACCAG AGCATCGACT TTTTCTCGAA AAACCCGGTG 
GCCCGGCTGG TGACCCGGAC CACCAACGAC ATTCAGAACA TGCACGAGAT GTTTACCTCG 
GTGCTGACTT TTTTCTTCAA AGATATGTTC CTGGTGATCG GTATTGCCGT TGTGATGACC 
ATCCTCTCCC CGCGCCTGGC CCTGGCCTGC TTTACCGTGC TGCCCCTGGT GATCCTTGCC 
GCCGTCTATT TTGCCGGCGC GGCCCGAAGG CCCTTTCGCG CCATGCGGGT GAAGATCGCC 
GAGATCAACG CCCGGATTTC AGAAACCATT GAAGGCATCT CCGTGATCCG GCTCTTTTCC 
CAGGAGGCCC GTAATTTTGA GAAATTCGAC CGGGCCAACC GTGAATATTA CCGGGCCGGC 
ATGCAGCAGA TTCATATTGT GGCGGTGTTC CTGCCGGCCA TTGAAATGCT GGGCACCGTG 
GCCCTGGCTA TAGTGATCTA CGCCGGGGGC CGGGGTGTGC TGTCCGATAC CCTCACCATC 
GGCGTGCTGG CCGCTTTTAT CTCCTACATC AAGATGTTTT TTCGGCCCAT TCGGGACATC 
GCTGAAAAAT ACAACATCAC CCAGAACGCC ATGTCGTCGG CGGAGCGGAT TTTCCAGGTG 
CTTGACACCG ACGAGCGGGT GGTTCGGCCC GGCGCTGACG CCGCGGCCGG CGAACCGGGG 
GATGGTTTCC ACATTCAGAC CCTGTCGTTT GAAGACGTCT CTTTTGCCTA CGTGGAAAAC 
GAGCCGGTTC TGGAAAATAT CTCTTTTACC GTGGAAAAGG GCCGCACCGT TGCCATCGTG 
GGCCCCACCG GCGCGGGAAA GACCTCCATC GCCAACCTGA TATTGCGGTT CTACGAGCCC 
CGGTCCGGCG CCATCACGGT AAACGGCGTC AATGTTCGGA ATTTTTCCAC CGCGGCCACC 
CGGTCGAAAA TCGGGTACGT GATGCAGGAC CCCTTTCTCT TTTCCGGGAC CCTGCGGGAC 
AACATCGTGT TCGGCAGCAA TGCGGTTTCC GATAACGCGC TTGCCGCCAT TCTGGAACAG 
GCCCACTGCA CATCCCTGGT GGCCAGCCTG GAAAAGGGCG TGGACACGGT GCTCACCCAC 
AAGGGCGCCC TGTTTTCCAG CGGCCAGCGG CAGCTGGTCT CCATTGCCCG GGCCTTTGCC 
AACGATCCGG ACCTGATCCT GTTTGACGAG GCCACCTCCT ACATCGACCT GGAAACCGAG 
CAGCATATCA AGCAGGCCCT GGCCAACCTG GCAAAGGGCC GGGCCGCTGT CATCATCGCC 
CACCGGCTCT CCACCATTCG GGACGCGGAC ACCATTCTGG TGCTGCACAG GGGCCGGATC 
GTGGAGTCCG GCACCCACGA CCATCTCATG GCGCAACAGG GATACTACTA CCGGTTGAAC 
CGGGTCCAGA GCCGGGCAAG GGAACAGTTC CGGAAGGAGA CCCACTGA 

 

Protein sequence

MTPPARSGKD RFAEATLGKR RDTALMVRLL PFIRPQAGWL ALAVGVVMLV TLFDLSIPYI 
TKVAIDSYMV PGTVVSEAGA GSGEKGRYLV VDLSDPAKKK VVNQYPGLFA SVDGRTARIS 
MEHLEKLDRT DLVLLRQDDI RRLALAALLV LGVAVAMFVL NFAQVMIMEY AGQRIMHSLR 
IKVFTHIQDQ SIDFFSKNPV ARLVTRTTND IQNMHEMFTS VLTFFFKDMF LVIGIAVVMT 
ILSPRLALAC FTVLPLVILA AVYFAGAARR PFRAMRVKIA EINARISETI EGISVIRLFS 
QEARNFEKFD RANREYYRAG MQQIHIVAVF LPAIEMLGTV ALAIVIYAGG RGVLSDTLTI 
GVLAAFISYI KMFFRPIRDI AEKYNITQNA MSSAERIFQV LDTDERVVRP GADAAAGEPG 
DGFHIQTLSF EDVSFAYVEN EPVLENISFT VEKGRTVAIV GPTGAGKTSI ANLILRFYEP 
RSGAITVNGV NVRNFSTAAT RSKIGYVMQD PFLFSGTLRD NIVFGSNAVS DNALAAILEQ 
AHCTSLVASL EKGVDTVLTH KGALFSSGQR QLVSIARAFA NDPDLILFDE ATSYIDLETE 
QHIKQALANL AKGRAAVIIA HRLSTIRDAD TILVLHRGRI VESGTHDHLM AQQGYYYRLN 
RVQSRAREQF RKETH