Gene Dole_3204 details

Gene Information

• Locus tag: Dole_3204
• ID: 5696066
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfococcus oleovorans Hxd3
• Kingdom: Bacteria
• Replicon accession: NC_009943
• Strand: -
• Start bp: 3838810
• End bp: 3840732
• Gene Length: 1923 bp
• Protein Length: 640 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 641265823
• Product: methionyl-tRNA synthetase
• Protein accession: YP_001531084
• Protein GI: 158523214
• COG category: [J] Translation, ribosomal structure and biogenesis; [R] General function prediction only
• COG ID: [COG0073] EMAP domain; [COG0143] Methionyl-tRNA synthetase
• TIGRFAM ID: [TIGR00398] methionyl-tRNA synthetase; [TIGR00399] methionyl-tRNA synthetase C-terminal region/beta chain

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCGACT GTTTTTACAT CACCACACCG ATCTACTATG TGAACGCAAA GCCCCATCTG 
GGTCACGCCT ATACCACCAT CATGGCCGAC GTGGCGGCCC GTTTTCATGC CATGGCCGGC 
AAAAAGGTCT TTTTTCTCAC CGGCACCGAT GAACACGGCG ACAAGATCAT GAAGGCCGCC 
GCGGCCCGGG GCGTATCGCC CAAGGCCTAT GCCGACACCA TTTCCGCCCT GTTCAGGGAT 
CTCTGGACCG AACTGGACAT CGGCTACAGC CACTTTATCC GCACCACCGA CGAGAATCAC 
AAACAGGTGG TAAGCCGGGT TCTGGCCGCC ATTTATGAGG CCGGCGACAT CTACTTCAGC 
GAATACGAGG GGCTTTACTG TTTCGGCTGC GAACGGTTCT ACACCGAGCG GGAGCTGGTA 
AACGGCAAGT GCCCGGACCA CGACACCCCG CCGGAGCGGA TTCAGGAGGC CAACTATTTT 
TTCAAGATGA GCAAGTACCA GCAGTGGCTG ATTGATCATA TTACCGACAA TCCCGATTTT 
ATCCGGCCCG AAGGCTACCG TACCGAGATT CTGTCGTTTT TAAAAGAGCC CTTAGACGAC 
CTGTGCATCT CCCGGCCCAC GTCCCGGCTG GACTGGGGCA TTCCCCTTCC CTTTGACGAC 
CGGTATGTGA CCTATGTATG GTTTGACGCC CTGCTCAACT ACGTGTCGGC CCTGGGGTAC 
CCGGACGACG ACAGGTACAT GACCTTCTGG CCCGCGGTTC AGCACCTGAC GGCCAAGGAC 
ATCATCAAGC CCCACGGCAT CTACTGGCCC ATCATGCTCA AGGCCGCCGG CATCCCCCTG 
TACAACCATC TCAACGTGCA CGGGTTCTGG CAGATCGAAT CATGCAAGAT GTCCAAGAGC 
CTGGGCAACG TGGTCAACCC CCTGGACATG AAAAACACCT ACGGCACGGA CGCCTTTCGC 
TATTTTCTCT GTCGGGAGAT GTCCTTTGGC CTGGATGCCG GGTTCTCCGA AGAAGCCCTG 
GTCCAGCGGA TCAACGCGGA CCTGGCCAAC GACCTGGGCA ACCTTTTTTC CCGGGTTCTG 
GCCATGACGG CCAAGTATTT TAAAAACCGG GTGCCGGCAG CAGACGACGC CAACCTGCCG 
CCGTGCGACA TCGACATTGG CGCCCTGGCC CGGACCACCG TGGCCGCGTA TGAGGCCCAG 
ATGGCGACCT TTCACATGAA CCGGGCCCTG GCCGCGGTCT GGGACCTGAT CAGCGCCATG 
AACCGGTTCA TCGACTACTC GGCGCCCTGG ACCCTTGCCA AAGACCCGGC CAAAGCCGAT 
GCCCTGGCCG CGGTGATCTA CACCCTGTTA GAAGGGCTGC GGATAGTGGC CGGCCTGGTC 
TACCCGGTGA TGCCCGGTAC CGGAAAAACC ATGATGGCCC ACCTGGGACT TGACGGCCCG 
GATTCGGAGC TGTTCCGGCT GGAGGACTTC AAGCAGTGGG GACGGCTTGT GCCGGACACC 
GTGGTGGCAA AACCGGCCTC TCTTTTTCCC CGGGTGGAAC TGGCGCCATC AACGGACAAC 
GCCTGTGCGC CCGAAGACGC ACCACCGGCC ATCGCGTTCG CGCCGGAGAT CGACATCGAC 
GCCTTTTCAA AGGTGGACCT GCGCGTGGGC ACGGTGACGG CCGCGGAAAA AATTCCCAAG 
GCCCGCAAGC TCCTCAAGCT CACCGTGGAC ATCGGCGAAA TTCGCACCGT GGTGGCGGGC 
CTTGCCGAAG CCTACGCGCC GGAAGATCTG GTGGGCAGGC AGGTGGTGAT CGTGGCCAAC 
CTCAAGCCCG CCGTCCTGAT GGGCGTGGAA TCCCACGGCA TGGTTTTGGC CGCGGTGGAC 
GGTAAAAACG GCATCACGGC CACGGTCGAT AAACCGGCCC CGCCGGGGAC GCGGCTTAAA 
TAG 

 

Protein sequence

MPDCFYITTP IYYVNAKPHL GHAYTTIMAD VAARFHAMAG KKVFFLTGTD EHGDKIMKAA 
AARGVSPKAY ADTISALFRD LWTELDIGYS HFIRTTDENH KQVVSRVLAA IYEAGDIYFS 
EYEGLYCFGC ERFYTERELV NGKCPDHDTP PERIQEANYF FKMSKYQQWL IDHITDNPDF 
IRPEGYRTEI LSFLKEPLDD LCISRPTSRL DWGIPLPFDD RYVTYVWFDA LLNYVSALGY 
PDDDRYMTFW PAVQHLTAKD IIKPHGIYWP IMLKAAGIPL YNHLNVHGFW QIESCKMSKS 
LGNVVNPLDM KNTYGTDAFR YFLCREMSFG LDAGFSEEAL VQRINADLAN DLGNLFSRVL 
AMTAKYFKNR VPAADDANLP PCDIDIGALA RTTVAAYEAQ MATFHMNRAL AAVWDLISAM 
NRFIDYSAPW TLAKDPAKAD ALAAVIYTLL EGLRIVAGLV YPVMPGTGKT MMAHLGLDGP 
DSELFRLEDF KQWGRLVPDT VVAKPASLFP RVELAPSTDN ACAPEDAPPA IAFAPEIDID 
AFSKVDLRVG TVTAAEKIPK ARKLLKLTVD IGEIRTVVAG LAEAYAPEDL VGRQVVIVAN 
LKPAVLMGVE SHGMVLAAVD GKNGITATVD KPAPPGTRLK