| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_3126 |
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| Symbol | |
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| ID | 5695986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 3750017 |
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| End bp | 3752071 |
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| Gene Length | 2055 bp |
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| Protein Length | 684 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641265743 |
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| Product | sigma-54 factor interaction domain-containing protein |
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| Protein accession | YP_001531006 |
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| Protein GI | 158523136 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAATCA ACTCCGACAC GCTTTTGCAG CGCGTTCAGC AGCGTATTTT TGATGAGGGC
GACCTGCAGG AAGGGCTGAA TGAAGTCTAT CATTGTGTTT CAGCGGTCAT GCCTGTCGGT
AAAATGAGCT GGCTCCAGTT TCATTATGAC CTTAATATGT TAAGGGTTAT CGCACAGGCC
ACGGAGATAG GCGGTGAAAA AACCAATTTC ACTTACAATC TTCCGGGCGA GCTCATAGCG
TTGCTGTGCA GCCGGGACAT ACCTGAAATT TACCTGATGA ATCACCCGGA AAAGGACCCC
CTGGGCAAAG AGATCTGTAA TCGCGCCAAG CTTTTTGACT GGTCCTCCCT GTTTTTAAAT
TTTCAAAACC ATACCGGCAC GTACGGCGCG ATAATGATAA TGACAGACAG AAAGAACAGA
TATACCGAAG CGCATGGCCG TTTGCTCTCC GGTTTGAAGA AGCCCCTTCA GCGGGTGATG
GATGCCCTTA TTCTGGATAA TGAAACAAGA AGCCCGCATC CAAAGCTGAA AGAACCGGTA
AAAGACAAAA ATGAGTTTTT CCGGCAGGTC ACCCGGCGAT TGTGCGGTCA CCTTGACCTG
CAAGCCGGTG TTTCCCAATG CCTTCAGTAT CTCAGCCGAT TTATGCCGGC TGACGCACTT
TTTGTCCGGC AGCGGGAACC GGAGTTTCAA TCCGAACGGG TGCTGGCGGA AAGTTATGGC
TTCTTTCATC AGCAGACAGG GACCCTGATC CCTCTGCCCA TTCCGGCCGA CACAAGGCGA
ACCCCCGGGA TACGCATCAT CAACCGGCCT GAAGACTCTT CGGCCCTGAA ACTCTATATG
CCCATATTCG GGAGTGAAAT ATGCTGTATC AGCATGCCGC TGATTCATAA AGAGAGGCCG
ATTGGTGCTG CCGTTGTGGG CCTGGAAGGC AGGGCGCGTT ATACGGAGGA GCACATGCAG
CTTTTCGCGC TGCTTCATGA TCCCTTTGTC CTGGCCTTGT CAAACAACAT CCGGCACCGT
GAGGTTATCC GGCTGAAGAA TTTAGTTGAA GAAGAGAAAA AAGACCTGGC CGAAGAGTTG
CACTGCACGG CGCCGGATAC CATTATTGGC GGCAGCTTGG GTTTAGAGAA AGTCATGGAA
AATGCCCGCC TCGTCGCCGG GCAGGACAGC CCGGTTTTGC TGACAGGAGA AACCGGGGTT
GGCAAGGAGA TGATCGCGAA TTTCATTCAC TGGCAGTCAT CGCGCAAAGA CGGCCCCTTG
ATAAAAGTCA ATTGCGGCGC CATTCCGGAT ACGCTGGTGG ACAGCGAACT GTTCGGTCAT
GAAAAGGGCG CGTTCACAGG GGCAACGCGG CAAAAATTGG GCCGCTTTGA AAGAGCCAAT
GGCGGGACGA TCTTTCTGGA TGAAATCGCT GAACTGCCCC TGCCAGCCCA GGTCCGCATG
CTCCGGGTGC TGCACAATAA AATTATCGAG CGCGTGGGCG GCACGGAGTC CATACCCGTT
GATATCCGTA TCATTGCCGC CACCCACCGC AACCTGGAAG AACGGGTCAA AGCCGGCCGG
TTTCGAGAAG ATTTGTGGTT CCGCCTGAAT GTTTTTCCCA TCCGGATTCC TCCGCTTCGA
TCGAGAACCA TGGACGTTCC GGCCCTTTCG GATCATTTTA TTGAAAAGAA ATCCCGTGAA
TTAAAGATTC ATCCCACGCC CCCCCTGTCT CCCGACGCCA TGGCAAGATT GACCGCTTAC
AGTTGGCCGG GAAATGTCCG CGAACTGGAA AATGTGATTG AAAGGGAGTT GATCCTGAAT
ACAGGCGGGC CCCTGACCTT TCAGAACCTC AGCCCCACGC CCACGCATGA GGAACCTGCG
GGTCATGACA TGAAAACAGA GGACATCCTG TCCCTTGATG ACCTTTTTGT TCGTCACGTC
AAAAAAGTGC TGGTCCTTTC CAATGGCAAA ATAAACGGTC CGGGCGGCGC CGCGGAAATG
ATGAAGATAA AGCCCAACAC CCTTCGCAAC CGGATGAAGA AACTGGGTAT TGCCTACGGC
CGGGAAAAGA GATGA
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| Protein sequence | MTINSDTLLQ RVQQRIFDEG DLQEGLNEVY HCVSAVMPVG KMSWLQFHYD LNMLRVIAQA
TEIGGEKTNF TYNLPGELIA LLCSRDIPEI YLMNHPEKDP LGKEICNRAK LFDWSSLFLN
FQNHTGTYGA IMIMTDRKNR YTEAHGRLLS GLKKPLQRVM DALILDNETR SPHPKLKEPV
KDKNEFFRQV TRRLCGHLDL QAGVSQCLQY LSRFMPADAL FVRQREPEFQ SERVLAESYG
FFHQQTGTLI PLPIPADTRR TPGIRIINRP EDSSALKLYM PIFGSEICCI SMPLIHKERP
IGAAVVGLEG RARYTEEHMQ LFALLHDPFV LALSNNIRHR EVIRLKNLVE EEKKDLAEEL
HCTAPDTIIG GSLGLEKVME NARLVAGQDS PVLLTGETGV GKEMIANFIH WQSSRKDGPL
IKVNCGAIPD TLVDSELFGH EKGAFTGATR QKLGRFERAN GGTIFLDEIA ELPLPAQVRM
LRVLHNKIIE RVGGTESIPV DIRIIAATHR NLEERVKAGR FREDLWFRLN VFPIRIPPLR
SRTMDVPALS DHFIEKKSRE LKIHPTPPLS PDAMARLTAY SWPGNVRELE NVIERELILN
TGGPLTFQNL SPTPTHEEPA GHDMKTEDIL SLDDLFVRHV KKVLVLSNGK INGPGGAAEM
MKIKPNTLRN RMKKLGIAYG REKR
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