Gene Dole_3125 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_3125 
Symbol 
ID5695985 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp3747909 
End bp3750020 
Gene Length2112 bp 
Protein Length703 aa 
Translation table11 
GC content52% 
IMG OID641265742 
Productputative sigma54 specific transcriptional regulator 
Protein accessionYP_001531005 
Protein GI158523135 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.189473 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACATATC CGGATCAGGG GCGGAAAAAC AGTATGGAAA CACAATCAGG CCTTGCGTTG 
AACCGGATAA TAGCGCGTGC CGCCTCCGGC GGAGACATCT ACAAGACGTT TTGCGCGTTT
TTTGATTGTA TTCATCTCTC TGTGCCCGTT GACCGAATGA GTGTGGTTCA ACTCGATTTT
GACCGGAAAA GAATACGGAT CATCGCCCAG GCCGCTTCCA CGGGAAGTGA AAAAACCAAT
TTTTCTTATT CGGCGCCGGC GGATCTCTTT GCGCTGGCAG CCAACGACAA TCTGCCTGAA
ATTTACATTA TCAATGAACC GGAAACAGAC CCCTTTGGAA ACGATATTGC CGAGAGAACA
GGCGGGGGGA CGGACTGGTC TCTGCTGGGC ATGTCCATTA AAGAACAAAC ATCTGTTTAT
GGGATGATTT TTTTTATTGC CGACAACAGG AACAGGTTTA CGGATGCCCA CATCCGCCTG
CTCCAGGGAT TAAAGAACGA GCATAAATGG CTGTTGGACA CGATGATGCA GGACCACGAA
AAAAAAATCC CGGGGCCGGA TCATTATGAG CCTGTAGACG ATAAATATGA GTTTTTTCGC
CAGGTCACCC GGCGGATATG TGGCCATCTG GACCTGGAAG CCGGGGCTTT GCACTGCCTT
CAATACCTGA GCCGGTTTAT GCCCGCCACC GTGCTTTCGG TCTACCAGCG GGAGCAGGAC
ATGAAGGCCG ATCGCGAAGT GGTCAGGGTC ACCGGCTTGT TGAAGGAGTA TAGCGGCCTG
GTCATTCCCC GGGATCCGGC AGGTCCGGGG GCCCCGGCAG GTAGGGCGGT TCCAAAAGTC
AAAGTCACCA ATCAGCCCGA ACGCGATTCC GAGCTGAACA GTTATGTAAA ATTATGGGGA
TCCGACTGGT CGGCGATTTC CATGTTTCTT TTTCATAAAA AAGTTCCCAT CGGTATCGCT
GCCATCAGCC AGGATGGGAA AAATCGCTAT ACCGAAGAAC ACAAAAATCT GTTTTCAATG
CTCCATGACC CATTTGCCCT GGGCCTTTCC AATAATATCA AGCACCGTGA AGTGATCCGG
CTGAAGAACC TGCTCGAAAA AGAGAAACAG TTTCTTAAGC AGGAAATTCG CAATCCGGAA
GAAAATAAAA TTATCGGCGG CAGCCTCGGC CTGAAAGGCG TCATGGACAA GGCCCGCCGC
GTGGCCGATC AGGAAAGCCC GGTATTGCTG TCAGGGGAAA CCGGCGTGGG CAAGGAAATC
ATCGCGAATT TCATTCACCA GAACTCTTCG CGAAAGGATG GCCCGTTAAT CAAGGTGAAT
TGCGGCGCCA TTCCGGACAC CCTGGTGGAC AGCGAACTGT TCGGGCATGA AAAAGGGGCC
TTCACCGGCG CCGAGAGCCG GAAAATGGGC CGCTTTGAAA GGGCCGACAG GGGAACGATT
TTTTTAGACG AAATCGCGGA ACTCCCGCGC CATGTCCAGG TCCGCCTGCT CCGGGTACTT
CAAAATAAAA TCATCGAGCG CGTTGGGGGC ACGGAGTCCA TACCCGTGGA TATTCGCATT
ATCGCCGCCA CCAACCGCAA CCTGGAAGAA CAGGTCGTGT CCGGGCAATT TCGGGAAGAT
CTGTGGTTCC GCCTGAATGT TTTTCCGATC CGGATTCCCC CCTTGCGATC AAGGCAGGCG
GACATCCCGG CGCTTGTCGC TTATTTTATT GAAAAAAAAT CCCGCGAAAT GAACCTTCAC
GTCAAACCGG TCCTGTCTCA GGACGCAATG GAGACATTGA CCGCTTACAG TTGGCCGGGG
AATGTTCGCG AACTGGAGAA CGTGATTGAA AGAGAATTGA TCCTGAGTAA AGACGGGTCG
CTCACATTCC AGACCGTTAT TCCCCGGATG TCAGGCGGCA AGACCCCGGA CAATGGAAAT
GCAGACGATG GCGTTTTAGA ACTGGATGAA GTCTATGCCC GGCACATCAA AAAAGTGCTG
GTCCTGTCCA AAGGCAAAAT AAACGGGCCC GGCGGTGCCG CGGAGATTCT GAAAATCAAT
CCCAACACCC TTCGCAACCG GATGAAAAAA CTGGGTATCC CCCACGGCTG GAAAAAAGAC
AACGCTTCTT AA
 
Protein sequence
MTYPDQGRKN SMETQSGLAL NRIIARAASG GDIYKTFCAF FDCIHLSVPV DRMSVVQLDF 
DRKRIRIIAQ AASTGSEKTN FSYSAPADLF ALAANDNLPE IYIINEPETD PFGNDIAERT
GGGTDWSLLG MSIKEQTSVY GMIFFIADNR NRFTDAHIRL LQGLKNEHKW LLDTMMQDHE
KKIPGPDHYE PVDDKYEFFR QVTRRICGHL DLEAGALHCL QYLSRFMPAT VLSVYQREQD
MKADREVVRV TGLLKEYSGL VIPRDPAGPG APAGRAVPKV KVTNQPERDS ELNSYVKLWG
SDWSAISMFL FHKKVPIGIA AISQDGKNRY TEEHKNLFSM LHDPFALGLS NNIKHREVIR
LKNLLEKEKQ FLKQEIRNPE ENKIIGGSLG LKGVMDKARR VADQESPVLL SGETGVGKEI
IANFIHQNSS RKDGPLIKVN CGAIPDTLVD SELFGHEKGA FTGAESRKMG RFERADRGTI
FLDEIAELPR HVQVRLLRVL QNKIIERVGG TESIPVDIRI IAATNRNLEE QVVSGQFRED
LWFRLNVFPI RIPPLRSRQA DIPALVAYFI EKKSREMNLH VKPVLSQDAM ETLTAYSWPG
NVRELENVIE RELILSKDGS LTFQTVIPRM SGGKTPDNGN ADDGVLELDE VYARHIKKVL
VLSKGKINGP GGAAEILKIN PNTLRNRMKK LGIPHGWKKD NAS