| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_3125 |
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| Symbol | |
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| ID | 5695985 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 3747909 |
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| End bp | 3750020 |
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| Gene Length | 2112 bp |
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| Protein Length | 703 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641265742 |
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| Product | putative sigma54 specific transcriptional regulator |
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| Protein accession | YP_001531005 |
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| Protein GI | 158523135 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.189473 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACATATC CGGATCAGGG GCGGAAAAAC AGTATGGAAA CACAATCAGG CCTTGCGTTG
AACCGGATAA TAGCGCGTGC CGCCTCCGGC GGAGACATCT ACAAGACGTT TTGCGCGTTT
TTTGATTGTA TTCATCTCTC TGTGCCCGTT GACCGAATGA GTGTGGTTCA ACTCGATTTT
GACCGGAAAA GAATACGGAT CATCGCCCAG GCCGCTTCCA CGGGAAGTGA AAAAACCAAT
TTTTCTTATT CGGCGCCGGC GGATCTCTTT GCGCTGGCAG CCAACGACAA TCTGCCTGAA
ATTTACATTA TCAATGAACC GGAAACAGAC CCCTTTGGAA ACGATATTGC CGAGAGAACA
GGCGGGGGGA CGGACTGGTC TCTGCTGGGC ATGTCCATTA AAGAACAAAC ATCTGTTTAT
GGGATGATTT TTTTTATTGC CGACAACAGG AACAGGTTTA CGGATGCCCA CATCCGCCTG
CTCCAGGGAT TAAAGAACGA GCATAAATGG CTGTTGGACA CGATGATGCA GGACCACGAA
AAAAAAATCC CGGGGCCGGA TCATTATGAG CCTGTAGACG ATAAATATGA GTTTTTTCGC
CAGGTCACCC GGCGGATATG TGGCCATCTG GACCTGGAAG CCGGGGCTTT GCACTGCCTT
CAATACCTGA GCCGGTTTAT GCCCGCCACC GTGCTTTCGG TCTACCAGCG GGAGCAGGAC
ATGAAGGCCG ATCGCGAAGT GGTCAGGGTC ACCGGCTTGT TGAAGGAGTA TAGCGGCCTG
GTCATTCCCC GGGATCCGGC AGGTCCGGGG GCCCCGGCAG GTAGGGCGGT TCCAAAAGTC
AAAGTCACCA ATCAGCCCGA ACGCGATTCC GAGCTGAACA GTTATGTAAA ATTATGGGGA
TCCGACTGGT CGGCGATTTC CATGTTTCTT TTTCATAAAA AAGTTCCCAT CGGTATCGCT
GCCATCAGCC AGGATGGGAA AAATCGCTAT ACCGAAGAAC ACAAAAATCT GTTTTCAATG
CTCCATGACC CATTTGCCCT GGGCCTTTCC AATAATATCA AGCACCGTGA AGTGATCCGG
CTGAAGAACC TGCTCGAAAA AGAGAAACAG TTTCTTAAGC AGGAAATTCG CAATCCGGAA
GAAAATAAAA TTATCGGCGG CAGCCTCGGC CTGAAAGGCG TCATGGACAA GGCCCGCCGC
GTGGCCGATC AGGAAAGCCC GGTATTGCTG TCAGGGGAAA CCGGCGTGGG CAAGGAAATC
ATCGCGAATT TCATTCACCA GAACTCTTCG CGAAAGGATG GCCCGTTAAT CAAGGTGAAT
TGCGGCGCCA TTCCGGACAC CCTGGTGGAC AGCGAACTGT TCGGGCATGA AAAAGGGGCC
TTCACCGGCG CCGAGAGCCG GAAAATGGGC CGCTTTGAAA GGGCCGACAG GGGAACGATT
TTTTTAGACG AAATCGCGGA ACTCCCGCGC CATGTCCAGG TCCGCCTGCT CCGGGTACTT
CAAAATAAAA TCATCGAGCG CGTTGGGGGC ACGGAGTCCA TACCCGTGGA TATTCGCATT
ATCGCCGCCA CCAACCGCAA CCTGGAAGAA CAGGTCGTGT CCGGGCAATT TCGGGAAGAT
CTGTGGTTCC GCCTGAATGT TTTTCCGATC CGGATTCCCC CCTTGCGATC AAGGCAGGCG
GACATCCCGG CGCTTGTCGC TTATTTTATT GAAAAAAAAT CCCGCGAAAT GAACCTTCAC
GTCAAACCGG TCCTGTCTCA GGACGCAATG GAGACATTGA CCGCTTACAG TTGGCCGGGG
AATGTTCGCG AACTGGAGAA CGTGATTGAA AGAGAATTGA TCCTGAGTAA AGACGGGTCG
CTCACATTCC AGACCGTTAT TCCCCGGATG TCAGGCGGCA AGACCCCGGA CAATGGAAAT
GCAGACGATG GCGTTTTAGA ACTGGATGAA GTCTATGCCC GGCACATCAA AAAAGTGCTG
GTCCTGTCCA AAGGCAAAAT AAACGGGCCC GGCGGTGCCG CGGAGATTCT GAAAATCAAT
CCCAACACCC TTCGCAACCG GATGAAAAAA CTGGGTATCC CCCACGGCTG GAAAAAAGAC
AACGCTTCTT AA
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| Protein sequence | MTYPDQGRKN SMETQSGLAL NRIIARAASG GDIYKTFCAF FDCIHLSVPV DRMSVVQLDF
DRKRIRIIAQ AASTGSEKTN FSYSAPADLF ALAANDNLPE IYIINEPETD PFGNDIAERT
GGGTDWSLLG MSIKEQTSVY GMIFFIADNR NRFTDAHIRL LQGLKNEHKW LLDTMMQDHE
KKIPGPDHYE PVDDKYEFFR QVTRRICGHL DLEAGALHCL QYLSRFMPAT VLSVYQREQD
MKADREVVRV TGLLKEYSGL VIPRDPAGPG APAGRAVPKV KVTNQPERDS ELNSYVKLWG
SDWSAISMFL FHKKVPIGIA AISQDGKNRY TEEHKNLFSM LHDPFALGLS NNIKHREVIR
LKNLLEKEKQ FLKQEIRNPE ENKIIGGSLG LKGVMDKARR VADQESPVLL SGETGVGKEI
IANFIHQNSS RKDGPLIKVN CGAIPDTLVD SELFGHEKGA FTGAESRKMG RFERADRGTI
FLDEIAELPR HVQVRLLRVL QNKIIERVGG TESIPVDIRI IAATNRNLEE QVVSGQFRED
LWFRLNVFPI RIPPLRSRQA DIPALVAYFI EKKSREMNLH VKPVLSQDAM ETLTAYSWPG
NVRELENVIE RELILSKDGS LTFQTVIPRM SGGKTPDNGN ADDGVLELDE VYARHIKKVL
VLSKGKINGP GGAAEILKIN PNTLRNRMKK LGIPHGWKKD NAS
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