| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_3104 |
|---|
| Symbol | |
|---|
| ID | 5695964 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | - |
|---|
| Start bp | 3721605 |
|---|
| End bp | 3723269 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641265721 |
|---|
| Product | TRAP dicarboxylate transporter- DctP subunit |
|---|
| Protein accession | YP_001530984 |
|---|
| Protein GI | 158523114 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000165592 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCATCA TCACACATCG GCACATCGGA CATCGCGTGG CATGCGTGTG TCTCGCGATT
TTTTTATCCT GCGCCGCTTC CAACGTTCGG GCGGCGAACA TGACCAGGGC ACAAATGCAG
ACCATACTGG ATGAGAGCAT TGAGGCCCTG CTCACCGGGC AGCCCTTTGG CCCGGGCCTG
GAGACAAAAC AGCTGGCCTT AAGAAAATCT TTTGAAGCCG GCGCTGTTAC AAAGGACCAG
TTGATCGGCA TGGTGGAAAC ATCGATGATG CCGATGCTGG ATGCCTACCA TGAACGGATA
TCGGTCGACA GCCTGAAAAC CCTGCCGGCG CGCGTGGAGC CACTGCTCTC TCCCTATATG
AGCTGGGAAG AGGTAAAGGC CGCGGGCTGG CGGATTGCAT CCCCCCATAT CAACAAGAGC
ATCAAGGATC TGCTCACCGG GCAGCCCTTC AGTCCGGACC TGGTGAAAAA GCAGCTGGTT
GTAAGGAAGA TGTTTGAAGC CGGCCTGATC ACCAAGCCGG AGTGTATCGC CATGGTGGAG
GCGGCGATGC TGCCGATCCT GAACGAGCAC AGGACCTCCC GGTATATTTT AAAAGAGATG
CCCGATCGGG TGGAGGCCCT GCTTTCTCCT TACATGAGCT GGGAGGAGGT TACGGAGGCG
GCCTGGCGGA TGGGGTCCTC CCTGATCAAG GACGGGGACC AGATGGTCCT TTCCATCGGT
ACCCTTGCAC CGCCCGGCAC ACCGTGGATG AATATGCCAG AAAAGGTGCT GCTGCCCCGG
ATCGCGAAGC TTTCCAATAA AAAGGTCGTC ATCAAGGTAT ACGGCGGCGG GGTTATGGGT
GAAGACACCG ACATCCTGCG GAAAATGGAT ATCGGCCAGC TCAGCGGCTG CGGGTGCACG
GCCCTTGGCA TTCTGGCGGC CTCTCCGGAA ACAGCCGTCT TTCTGCTGCC CGGGTTTTTC
AGGAATTACG ATGAAGTGGA CTTTATAATG GAAAAGTTCA GAAAAAGGAT CGACCGGTCT
TTTGAGGAGC GGGGGTATAT CCTGGGCGCC CTGATCGACA CCGGTTTTTT CTACATGTTT
TTCAAAAACC CGGTGGCCGG CCTGGCTGAC CTGAAAAAAC AGAAACTGCT GACCTGGTTC
GGTGAAGTGG AGACCACATT TTACAAGGAG CTCGGTATCG ACGCCACGCC GGTGGCGGTG
CCCGAGACGA TTGCGGCCCT GAGTACAGGC CTGGCCAATG CCAACCTGGC GCCGGCCGCC
TGGATGCTGG GTATGCAGGC CTACCAGTAC GCTGACTACT ATTTTACCCC TCCGCTGCTG
TATTCCCCCG GCGCCATCGT GGTTTCCGTA GCCACCAAGG AAAAGCTTCG CAAGCAGTTC
GGTGTGTCCG AGACCCTGGC CTACAATGTC CAGGAAATGC TGATTTACGA GGTCAGCAGG
CTGGAGCCGG AGTGGAAAAA AGAGGTGCGG GATTATGAGG CCAGGAGCCT GAAGGCGTTT
CAGGTCAAGT GCGGCATGAA GCCCGTGCCG CTTTCCGTGG AGGACCAGAA GACGATTGCC
GAGGCGGCAT CGCGGGTTTA TGAAAAGCTG GCGGATAAAG CCTATCCCCG GTCATTGATG
GCAGACATGC AAAAGGCGCT TGAGGCGTAC CGGGCCGGCT TGTAA
|
|---|
| Protein sequence | MFIITHRHIG HRVACVCLAI FLSCAASNVR AANMTRAQMQ TILDESIEAL LTGQPFGPGL
ETKQLALRKS FEAGAVTKDQ LIGMVETSMM PMLDAYHERI SVDSLKTLPA RVEPLLSPYM
SWEEVKAAGW RIASPHINKS IKDLLTGQPF SPDLVKKQLV VRKMFEAGLI TKPECIAMVE
AAMLPILNEH RTSRYILKEM PDRVEALLSP YMSWEEVTEA AWRMGSSLIK DGDQMVLSIG
TLAPPGTPWM NMPEKVLLPR IAKLSNKKVV IKVYGGGVMG EDTDILRKMD IGQLSGCGCT
ALGILAASPE TAVFLLPGFF RNYDEVDFIM EKFRKRIDRS FEERGYILGA LIDTGFFYMF
FKNPVAGLAD LKKQKLLTWF GEVETTFYKE LGIDATPVAV PETIAALSTG LANANLAPAA
WMLGMQAYQY ADYYFTPPLL YSPGAIVVSV ATKEKLRKQF GVSETLAYNV QEMLIYEVSR
LEPEWKKEVR DYEARSLKAF QVKCGMKPVP LSVEDQKTIA EAASRVYEKL ADKAYPRSLM
ADMQKALEAY RAGL
|
|---|
| |