| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_3078 |
|---|
| Symbol | |
|---|
| ID | 5695938 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | - |
|---|
| Start bp | 3687713 |
|---|
| End bp | 3689110 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641265695 |
|---|
| Product | TRAP dicarboxylate transporter- DctP subunit |
|---|
| Protein accession | YP_001530958 |
|---|
| Protein GI | 158523088 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000806193 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGAGGTA TTTTGCATCG ACTGTTCCTG GGGCGTGCTT TTTTTGCCCT TTCCCTGGCG
CTGTTGCTCC TGACCGGCGT GGTTCCATCC GTCTGCGCGG CAACGCTTGC CAAGGAGGAG
GTCCGGAGCG TACTGCAAGA AAGCACCCAG GCCCTGCTGT CCGGAAGCGC CTTTTCGCCG
GCTCTGGAAG AAAAACAGCA GGCATTAAGA GAGACGTTGC AGTCCGGCGC CATCAAGCGG
GCCGAACTGT CGGCCATGCT GGAAGAGAGC ATTGTTCCCA TCCTCGAAAA ACACCGCACG
TCACGTTATA TCCTGAAAGA CCTTCCGGCA AAGTTTGACA AGCTGGTGGC GCCTTACATG
GAGTGGGAGG AGGTAAAGGC CGTTGTCTGG AAGGCCTGCT CCGCCCTTAT TCCGGACGGC
GAGCAGCTGA TGCTCAAGAT TGGCACCCTG GCCCCTCCGG GTACGCCCTG GCTCAACGTT
CCCGAAACCC TGCTGGTGCC CCAGATGGCA AAGCTTTCCA ACAACAAGGT GGTGATCAAG
ATATACGGCG GTGGTACCAT GGGGGAAGAC ACCGATATCC TGAGAAAGAT GGATATCGGC
CAGCTGGAGG GGTGCGGCTG CACGGCCCTT GGCATTCTGG CCGCCTCCCC GGAAACCGCT
GTTCTTCTTC TGCCGGGCCT GTTCAACAAC TATGATGAGA TCGACTATAT CTATGAAAAG
TTTCGCAGGC GGCTGGACCG GGCCTTTGAG GAAAAAGGAT ATATCCTGGC CGCCCTGATC
GACACCGGTT TTTTTCACGT GTTTACAAAA AACAAAATAA CCGGCCTGGC GGACCTGAAA
AAGCAGAAGG TGCTCACCTG GTTCGGTATC ATGGAGACCA CGCTTTTCCG GGAGCTGGGC
ATTGATGCCA CGCCCGTGGC CGTGCCCGAG GTGGTATCGG CGTTAAGCAC GGGGCTGGCC
AACGCCAACC TGGCGCCGGC GGCATGGATG CTGGGCATGC AGGCCTACCA GTATGCCAAT
TACTACACGA CGCCGGCCCT GCTGTACTCG CCGGCGGCCG TGGTGGTCAG CACCCAGACC
AAGGACCGGT TCCGCAAGCA GTTCGGCATG TCCGAACTGT TTGCCGACAA TATCACGGAA
CTGCTTGTCT ATGAGGTCTC CACCCTGGAA ACCGAGTGGC GTAAGCAGAT TCGCGATTAC
GATGCAAAAA GCCTGAAGGC GTTTGAGGCC AAGTGCGGCA TGAAGCCGGT GGTCCTTTCT
CAGGCGGACC GGCAGGCTCT GGAAAAGGCC GCCAAAGGGG TCCAGGCCAA GCTGGCGGGC
AAGGCGTTTC CCGAAGATCT CATGAACGAG ATAATCAAGG CCCTTGAGGA TTACCGGGCC
GGGGGGACGG GTCGGTAA
|
|---|
| Protein sequence | MGGILHRLFL GRAFFALSLA LLLLTGVVPS VCAATLAKEE VRSVLQESTQ ALLSGSAFSP
ALEEKQQALR ETLQSGAIKR AELSAMLEES IVPILEKHRT SRYILKDLPA KFDKLVAPYM
EWEEVKAVVW KACSALIPDG EQLMLKIGTL APPGTPWLNV PETLLVPQMA KLSNNKVVIK
IYGGGTMGED TDILRKMDIG QLEGCGCTAL GILAASPETA VLLLPGLFNN YDEIDYIYEK
FRRRLDRAFE EKGYILAALI DTGFFHVFTK NKITGLADLK KQKVLTWFGI METTLFRELG
IDATPVAVPE VVSALSTGLA NANLAPAAWM LGMQAYQYAN YYTTPALLYS PAAVVVSTQT
KDRFRKQFGM SELFADNITE LLVYEVSTLE TEWRKQIRDY DAKSLKAFEA KCGMKPVVLS
QADRQALEKA AKGVQAKLAG KAFPEDLMNE IIKALEDYRA GGTGR
|
|---|
| |