| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_3068 |
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| Symbol | |
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| ID | 5695928 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 3677314 |
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| End bp | 3678726 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641265685 |
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| Product | PAS modulated sigma54 specific transcriptional regulator |
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| Protein accession | YP_001530948 |
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| Protein GI | 158523078 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCATCA ATACCAGCAA CCGCACATCC ATTACTCCTG AGTTTGCCGT GATGCTGTTT
GACGCCATGG CGGAAGGGGT TTTTGCTTTG GATAAAAATG GCCGCATTCT TTCGTGGAAT
CCGGCCATGG AAAAAATCAG CGGATATCCG GCCGGCGAGG CTTTGGGCCA AAATTGCTCG
CTTTTGAAAT TTACCGAGTG CTTTGGCAAA ACCTGCCCGG CCGGCATGAG CGAATGCGGC
ATTTTCAAGC ACGGCCGGGT CAACTCAAAA GAGTGCCGGC TGCGGCACAA AGACGGCCGC
CATGTGCCGG TGATGAAAAG CGCGCGGGTG GTTACCGACG ACACCGGCGA GGTGATCGGT
GTTGTCGAGA CGGTTTCCGA TCTTACCGAA CTGCAAGAGG CCCGTCAGCA GCTGGCCGAG
GCTGGCCGCA AGCTGGGAGA GATTCACCGG CTGGACAACA TCATCGGCAA AAGCAACGCC
ATGAACAGGG TCTTTGCCGC GGTGGAGGCG GCCGCGGCCA GCGATGCCAC GGTTTTGATC
CAGGGGGAGA GCGGCACCGG CAAGGAGCTG GTGGCCGGCG CCATTCATCA CAACAGCGCC
CGTTCCCAGG GACCGATGAT CACGGTGAAC TGCAGCGCCC TGTCCGAATC CCTGCTGGAG
AGCGAGCTTT TCGGCCATGC CAGGGGATCG TTCACCGGGG CCCATCGGGA CAGAAAAGGC
CGTTTTGAAG AGGCTGACGG CGGTACCGTG TTCCTCGACG AAATCGGTGA AATTAGCCCT
TTCATCCAGG TCAAGCTGCT GCGGGTGCTT CAGGAAAGAA CCGTGGAGCG GGTGGGCGAG
TCCCAGAAAC GGTTCGTGGA CATTCGCATT CTTACCGCCA CCAATAAAAA CCTGCTGGCC
CTTGTCAACA GCGGCGAATT CAGGCAGGAC CTTTATTACC GGCTCAAGGT TTTTCCCGTC
CAGGTGCCGC CGCTGAAGGA TCGCAGGGAA GACATTCCCC TGCTGGTTGA GCACTTCATC
ACGATGGAGA ACCGCAAAAC CGCCAAGAAC ATTGCGGGCG TGACAGCCAA CACCATGCGC
CTGCTGATGG ATTACAACTG GCCGGGCAAT GTGCGGGAAT TGGAAAACGC CATTGAGCAC
GCCTTTGTGC TGTGCTCGGA AAATGGGACT ATCTCGCCTT TTGATCTGCC GGTGGAGATT
CGCAAGGCCG ATTATTATGC CGGTCATGGG GACGCCGGAT TGCTTTCCGT TGTCTCGCCT
CCCCGTCCCC TGACCCGCCA CTCCCTGCTG GAGCTGCTGG CTGCCTGCAA CTGGAACAAG
GCCGAAGTTG CCAGAAGGGC CGGCGTGAGT CGCACCGCCA TCTGGAAACA GATGAAAAAG
TGGAATATTC CCCTTCAGCC GCCTGAAAAA TGA
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| Protein sequence | MGINTSNRTS ITPEFAVMLF DAMAEGVFAL DKNGRILSWN PAMEKISGYP AGEALGQNCS
LLKFTECFGK TCPAGMSECG IFKHGRVNSK ECRLRHKDGR HVPVMKSARV VTDDTGEVIG
VVETVSDLTE LQEARQQLAE AGRKLGEIHR LDNIIGKSNA MNRVFAAVEA AAASDATVLI
QGESGTGKEL VAGAIHHNSA RSQGPMITVN CSALSESLLE SELFGHARGS FTGAHRDRKG
RFEEADGGTV FLDEIGEISP FIQVKLLRVL QERTVERVGE SQKRFVDIRI LTATNKNLLA
LVNSGEFRQD LYYRLKVFPV QVPPLKDRRE DIPLLVEHFI TMENRKTAKN IAGVTANTMR
LLMDYNWPGN VRELENAIEH AFVLCSENGT ISPFDLPVEI RKADYYAGHG DAGLLSVVSP
PRPLTRHSLL ELLAACNWNK AEVARRAGVS RTAIWKQMKK WNIPLQPPEK
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