| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_3031 |
|---|
| Symbol | |
|---|
| ID | 5695890 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | - |
|---|
| Start bp | 3637331 |
|---|
| End bp | 3638242 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641265647 |
|---|
| Product | tRNA pseudouridine synthase B |
|---|
| Protein accession | YP_001530911 |
|---|
| Protein GI | 158523041 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0130] Pseudouridine synthase |
|---|
| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000000998148 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGAGC AGCCGGACGG GATCATCGTG GTCAACAAGC CGGCCGGCAT CACCTCCGCG
AAGGTGGTGG CCCTTGTGAA ACGCCACACC GGCGCGCGCA AGGTCGGCCA TGCCGGCACC
CTGGACCCCT TTGCCACCGG GGTGCTGGTC TGCCTGATCA ACCGGGCCAC GCGGCTGGCT
GAGTTTTTTC TGGCCAGTGA CAAGACCTAT GCGGCGGTCA TGTGCCTGGG CGTGGAAACC
GATACCCAGG ACCGCACCGG AACGGTCACG GCCGTCTGCG ACACCTCCCT GCAAACCGTT
TCAGATGATG CGATCCGGCG CGTGATGACC TCCTTTGAGG GTGAAGGTGA ACAGCGGCCC
CCGGCGTTTT CGGCGGTCAA GCACCAGGGC GTTCCTCTGT ACCGGCTGGC CCGGCAGGGG
GTTTATGTTG AAAAACCGGC TCGGCCGGTG GTGATTTCGT CGTTGACGGT GCAGGAGATA
TGTTGGCCCA TGGTCCGGTT TGAGGTGACC TGCTCATCGG GTACCTACAT ACGAACCCTG
TGCGCGGACA TGGGCCGGGC CCTGGGTTGC GGCGGGCATC TTTACGCCCT TGAAAGAACG
CGGGCCGGCG GTTTTGATCT GGCCCGGGCC GTGGACCTGG AGCACCTGGC GGACCTGTGC
AAAGCCGGGA AAGCAACGGA CCTGCTGGTC CCCATGAGCG AGGCATTGTC CGGTATGCCC
CGATTTACGG CCCCGCCGTC GCTGGCAGGC AGGATCGCCG CCGGAGGGCA GCTGACGGCA
GCGGATTTTG CCGGTTTTCC GGCCGCCGAT GCCGAAGGGT ATTTTCAGGT TACAGACGCC
GACGGCCGGT TGCTGGCCGT GGTCCAGCGT CATGAAGAAA CCTACCGGTA TCGGTGTGTG
CTGGCCGGAT AA
|
|---|
| Protein sequence | MTEQPDGIIV VNKPAGITSA KVVALVKRHT GARKVGHAGT LDPFATGVLV CLINRATRLA
EFFLASDKTY AAVMCLGVET DTQDRTGTVT AVCDTSLQTV SDDAIRRVMT SFEGEGEQRP
PAFSAVKHQG VPLYRLARQG VYVEKPARPV VISSLTVQEI CWPMVRFEVT CSSGTYIRTL
CADMGRALGC GGHLYALERT RAGGFDLARA VDLEHLADLC KAGKATDLLV PMSEALSGMP
RFTAPPSLAG RIAAGGQLTA ADFAGFPAAD AEGYFQVTDA DGRLLAVVQR HEETYRYRCV
LAG
|
|---|
| |