| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2927 |
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| Symbol | |
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| ID | 5695786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 3513931 |
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| End bp | 3516993 |
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| Gene Length | 3063 bp |
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| Protein Length | 1020 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641265543 |
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| Product | HsdR family type I site-specific deoxyribonuclease |
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| Protein accession | YP_001530807 |
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| Protein GI | 158522937 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCAGGC TTTCAGAACT CAAAGGCGTT GAAAAACCGG TCACGGAATG GCTCAGCAAA
ATGGGCTGGA CATTCCAGAG TAATGAAGGC CTGAAGGTTT ACAACCGTCC TTTTTCAAAT
CCGGTCATTG CGCAGATTTT GGTTGAAAAA GTTGCCGCCA TTAACGGTGC CTCTACAGAT
GTGGCGGAAA CCGCCGTGGA TCAGTTACTG CAGCACCTGA ACAACCCCAG TCCGATTATC
GGTAACGAAA ACTTTCTCGA AAAGCTGGTG AAAGGCATCA CGCTGTCGGT GGAAGGTGAA
GATCGGGATT TTTATTTTAT CGACTTTGAG GACATCTGGC AGAACAGTTT GATTGTTACC
AATCAGTATT GGGTTCAGGG TTTCAAGATG GTGAAGACGG ATATTGTTCT CTTGGTGAAC
GGTATTCCAC TGGTGCCTAT TGAGGCCAAG CAGCGGGCAC GTAAGGGAAC CAACTGGCTG
GAAGGTGTGA AGCAGTTTTC CACTTATGAC CAGCGGGCGG ATAAGCTGTT TATGTGTCAT
GGGTTTAGCG TGGCCTGCAA TGGGCGCATC ACCAAATACG GCATCCCCGG CGCCTCCTCA
TCCTATTTCA ATGAGTGGAA AAGTACGGTG TTGGAAACGG GTCAAAACAA TCCGATTTTA
GATCAAGATA ATGACCTCTG CCGAACCTAT CTGAATGATG AAGACGGGTT TTATCATTTT
GATGTGGAAC GATTGCCCAA TGGTGAGGTG CTGGAGCGTA TGAAGCTGGG GATTATCGGC
CTGCTGCAAC CGGCCCGTGT GTTGGACATC GTGAAAAATT TTCTGGTCTT TGAGCGGACG
GACGGCAAAA TCATCAAGAA GGTGGCACGG TATCAGCAGC TTCGTGCTGC CAACAAGATT
GTTCACCGGG TTGCAGAGTC CGATTTGAAG CAGGGGGTTA TCTGGCACAC CCAAGGATCA
GGCAAAAGCC TGACCATGCT TTATACCGCC TATAAACTCC GCAACACGCC GGGGCTTGAT
GATCCGACGG TCTATATCGT TGTTGACCGC AAGGATCTTC GTGAGCAGAT CGGTGGCACC
TTTGATGACT GCGCTTTCCC CAATGCCCGA CCGGTTTATA ACATTGGTGA CTTGAAACAC
ATCATTGATA AGGCTCCGGC CGGGGTCTTT ATAACCACGG TACAAAAATT CCAGGAGTTG
GGAAACCGGC AGGATACCCG GGACAATATC ATTATCCTGA TTGATGAGGC GCATCGAACG
CAGTACGGTG ATTTTCAGAT CGAACTCCAG AATGTGCTCC CCAATGCCCG GCGTTTTGCT
TTCACGGGGA CTCCGATACC AAAAACATAT CAGGAATTTG GTGCAAAGAA AGATAAAGGT
ACACAAGAGT ATTATCTCGA CAAGTACGGA ATTCTGGATG CGATTGAGGA TGGTGCAACG
GTTCCGATTC GATATACCTT CGGCCCACAG GAATGGTTCC TTGATAAGGA GAAGCTCAAG
CAGGGGTATG ACGAAATCAC CGCAGATTTA ACGGAGGATG AAAAAAGGCT GGTAGAAAAG
CGGGTCCAGG CATGGAAGGT CTTTTTGAAG CACGAAGACC GGATAAAGGT TCTGGCAAAG
GACATTGCGG AGGATTTCAA AAGTGTGGTG GAGCCCCAAG GCTTCAAAGC ACAAGTCGTT
GCCTGCGATA AGGAGGCCTG TGTGCTCTAC TATAATGAGC TTTTAAAATA CTTTGATCGA
TCCGAACTGA CGATCATTTT TTCCACCGGC AATTATGAAG AAGGTGAAAG GTATGAACTA
TTCAAGGACC ATTACAAAGA GGACAAAGAG CGCCGTCAAT TAATCGCCAA CTTCAAAAAA
CGCATCACTC CTGATGAACA GCGTGAAGGA AATAACCTTA AAATTATCAT CGTTTGTAAC
ATGCTCTTAA CCGGCTTTGA TGCACCGATT GAACAGACCA TGTATCTGGA TAGCCCAATC
AGGGACCATA ACCTGTTACA GGCCGTCGCC CGAACCAACC GCCCCTATGA CGATAGGGTT
TCGAAGCTAT CCAAGGAATT TGGACGCATC GTTGACTATA TTGGCGTATT TGAGAACTAC
AAAGAAGCGC TGAATTATGA TCCGGAGGAT ATCGGAGAAT TTGAGGATGT TGAAAGCCTT
GTCGATCAGT TTCCAAACGT GCTGGAAGCC GCCTTTGAGC CATTTAAAGA TATCAAGCTT
AAAGACACCT ATGAATGCTC AATGGAGATT GTTCGCAAGC TCACCGAGCT GGATCAGGGC
AAGTTTGAAC AGGATTACAG GGAAGTGCTT CAGTTATGGG AAGCTATTTC ACCTCATCCG
AAGCTTCGAG ATCATCAAAA AAAATATCGG TGGCTCAACG AGATTTATGA GATTTACCTT
GAAGAGTTCA AACGCCTCGA TTTTAACTCG GAGATATATG CGGCCAAAAC CAGAAAATTG
ATCCAGGAAA GTGCTAAACT GATCAACTTT AAAGGCCACC TGCCTGAGGT TAAAATTGAT
TCCAACTATT TGAACGAATT AAAAGAGACA AAGCTCTCTC CGTCTGATAA AGCGGAAAAG
CTTATTCGCG ATATTGAAAC CGTGATTCGG AGAAATGAAG CGAACAGTGC TGCGTATGTT
GAGTTCCAGA ACCGACTGGA AGAACTTATT AAAAAGAAAC AGGAAAAGAG TGAAACGATT
GAACAGCTTT TGCTTGAGTT GGGTGAACTC TACAGAGAAC TGGATGATAT CGCAACGCTG
CCGCAGAGAA TGGGGTTTGA AGATAAGGGG ACGTTTGAAA TCTTCACCCT TATTAAAAAT
GCTCGAACCA CTGACTTTCA TGAAGAACTA ACCAGAGAGT TCGCGAAAGA TGTTGTCGAT
TCGGTTATTC GCAAGAAGGT TTATATCGGC TGGCAGGATG TGGCGAATGA GGTCAATAGA
CTGCGCGTAA ACATTGAAAT CTTTGCGGCT GCAGACAACT ACCAGCAGTT GGCCATTGAT
GATGATGCAC AGCTTATGGA TGCCATTATG GTGGGTGTTG TGAAAAACTT TGGGTTGAAA
TGA
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| Protein sequence | MGRLSELKGV EKPVTEWLSK MGWTFQSNEG LKVYNRPFSN PVIAQILVEK VAAINGASTD
VAETAVDQLL QHLNNPSPII GNENFLEKLV KGITLSVEGE DRDFYFIDFE DIWQNSLIVT
NQYWVQGFKM VKTDIVLLVN GIPLVPIEAK QRARKGTNWL EGVKQFSTYD QRADKLFMCH
GFSVACNGRI TKYGIPGASS SYFNEWKSTV LETGQNNPIL DQDNDLCRTY LNDEDGFYHF
DVERLPNGEV LERMKLGIIG LLQPARVLDI VKNFLVFERT DGKIIKKVAR YQQLRAANKI
VHRVAESDLK QGVIWHTQGS GKSLTMLYTA YKLRNTPGLD DPTVYIVVDR KDLREQIGGT
FDDCAFPNAR PVYNIGDLKH IIDKAPAGVF ITTVQKFQEL GNRQDTRDNI IILIDEAHRT
QYGDFQIELQ NVLPNARRFA FTGTPIPKTY QEFGAKKDKG TQEYYLDKYG ILDAIEDGAT
VPIRYTFGPQ EWFLDKEKLK QGYDEITADL TEDEKRLVEK RVQAWKVFLK HEDRIKVLAK
DIAEDFKSVV EPQGFKAQVV ACDKEACVLY YNELLKYFDR SELTIIFSTG NYEEGERYEL
FKDHYKEDKE RRQLIANFKK RITPDEQREG NNLKIIIVCN MLLTGFDAPI EQTMYLDSPI
RDHNLLQAVA RTNRPYDDRV SKLSKEFGRI VDYIGVFENY KEALNYDPED IGEFEDVESL
VDQFPNVLEA AFEPFKDIKL KDTYECSMEI VRKLTELDQG KFEQDYREVL QLWEAISPHP
KLRDHQKKYR WLNEIYEIYL EEFKRLDFNS EIYAAKTRKL IQESAKLINF KGHLPEVKID
SNYLNELKET KLSPSDKAEK LIRDIETVIR RNEANSAAYV EFQNRLEELI KKKQEKSETI
EQLLLELGEL YRELDDIATL PQRMGFEDKG TFEIFTLIKN ARTTDFHEEL TREFAKDVVD
SVIRKKVYIG WQDVANEVNR LRVNIEIFAA ADNYQQLAID DDAQLMDAIM VGVVKNFGLK
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