| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2852 |
|---|
| Symbol | |
|---|
| ID | 5695710 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 3437647 |
|---|
| End bp | 3439230 |
|---|
| Gene Length | 1584 bp |
|---|
| Protein Length | 527 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641265467 |
|---|
| Product | D-3-phosphoglycerate dehydrogenase |
|---|
| Protein accession | YP_001530732 |
|---|
| Protein GI | 158522862 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00180336 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGTCC TGGTGAGTGA CAAACTGGGA GAGGCAGGCA TTGAACTGTT TAAAAATGAG
CCCGGCATTG AGGTGGACGT AAAAACCGAC CTGACGCCAG AAGCTCTCAT TCAGCAGATC
GGGACTTACG ACGCCCTGAT AATCCGCAGC GCCACCAAGG TGACCGCCGA GGTCATTACG
GCGGCCACCA ACCTCAAGGT GATCGGCCGG GCCGGCATCG GCCTGGACAA CGTCAACGTG
CCGGCCGCCA CCCAGAAGGG CATCGTGGTA ATGAACACGC CCACGGGCAA CACCATCACC
ACCGCCGAAC ACGCCATTGC CATGATGATG GCTCTGTCCC GCAACATTCC CCAGGCCACC
ATCTCCCTGA AGGCCGGCCG GTGGGAAAAG AAAAAACTTC AGGGCCAGGA GATGATGAAC
AAAACCCTGG GCCTGCTGGG CTTCGGCAAG ATCGGTTCCA TCGTGGCGGA CCGGGCACGG
GGCCTGCGCA TGAACGTGAT CGTGTTCGAC CCCAACGTGA ACCCGGAAAA AATTCAGGAA
GCCGGTTACG AAAGCGTCTC CCTGGATGAA CTGTATGCCC GGTCCGACTA CATCACCATT
CATGTACCCA AAATGGAAAA AACCATCGGC CTGCTCAATG CCGACGCCTT TTCCAGGATG
AAGGACGGGA TCATGATCAT CAACTGCGCC CGGGGCGGCA TCATCGACGA AGCAGCCCTC
TACGATGCCT TACAATCGGG AAAGGTGGCG GGCGCGGCCC TGGACGTGTT TGCCAAGGAG
CCGCCCGGTG AACATCCCCT GCTGACCTGC GAAAACGTGA TCTGCACGCC CCACCTGGGC
GCCTCCACCC AGGAGGCCCA GACCAACGTA GCCGTGGACG TGGCCCGGCA GATCATCGCT
TATCTGAAAG AGGGAACCAT CATCAACGCG GTCAACACGC CCTCGGTGAC CGGTGACCGC
CTGGCCCGGC TCAAACCCTA CCTGGAACTG GGCCGAAAGC TGGGGCTGCT GCTGGCCCAG
ATTCATCGCG GCAAACTGCA GGAAGTAGCC ATTGAATACA GTGGCGAGTA CCACGACCTG
GAGCTGGGGC CCATTTCCAC GGCCCTGATC AACGGGCTGC TGGAGCCTCT GGTGCGTGAG
GGCGTCAACG CGGTCAACGC CCCGGCCATT GCCCAGGAGA TGGGCATCAA GGTGACGGAA
ACCCTGCGGG CCGAGCCTTT TGACTACCTC AACCTGATGA CGGTGCGGGT GACCACCACA
GAGCAGACCG ACACGGTATC CGGCACCCTG TTCGGTAAAA TCTATCCCCG TATCGTGGAG
ATCAACGATT TCCGCGTGGA TGTCAGCCCG GAAGGCCACA TGCTGATCAT TCTCAGCGAG
AACAAGCCGG GCGTGATCGG CAGAATCGGC ACCACCTTCG GCGAAGGGGG CGTCAACATC
GTTCGCTTTA TGGTGGGCAA TGAAGCGATT GAGGGCCAGA AGAACATGGT GATCATCAAA
ACCGACGAGC CGGTGCCCGC CGATATCCTT GAGACGCTGA AGAGCAAAAA AGTCATCTTT
GAGGCCACAT CGGTCAACTT TTAA
|
|---|
| Protein sequence | MKVLVSDKLG EAGIELFKNE PGIEVDVKTD LTPEALIQQI GTYDALIIRS ATKVTAEVIT
AATNLKVIGR AGIGLDNVNV PAATQKGIVV MNTPTGNTIT TAEHAIAMMM ALSRNIPQAT
ISLKAGRWEK KKLQGQEMMN KTLGLLGFGK IGSIVADRAR GLRMNVIVFD PNVNPEKIQE
AGYESVSLDE LYARSDYITI HVPKMEKTIG LLNADAFSRM KDGIMIINCA RGGIIDEAAL
YDALQSGKVA GAALDVFAKE PPGEHPLLTC ENVICTPHLG ASTQEAQTNV AVDVARQIIA
YLKEGTIINA VNTPSVTGDR LARLKPYLEL GRKLGLLLAQ IHRGKLQEVA IEYSGEYHDL
ELGPISTALI NGLLEPLVRE GVNAVNAPAI AQEMGIKVTE TLRAEPFDYL NLMTVRVTTT
EQTDTVSGTL FGKIYPRIVE INDFRVDVSP EGHMLIILSE NKPGVIGRIG TTFGEGGVNI
VRFMVGNEAI EGQKNMVIIK TDEPVPADIL ETLKSKKVIF EATSVNF
|
|---|
| |