Gene Dole_2808 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_2808 
Symbol 
ID5695665 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp3387855 
End bp3389642 
Gene Length1788 bp 
Protein Length595 aa 
Translation table11 
GC content62% 
IMG OID641265422 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_001530688 
Protein GI158522818 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.277541 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGTCCA GGCAGCGACG AACGGTTTCC TTAAAAAGCA TCTTTCTGTT CGGCATCGTG 
GGGGTGCTTC TGATTGCCGT GCCCATCTTC GTATTCGTGG TGGTCGACAA CATCCGTACC
CATGACCAGC GGGTGGTGGA AAACATGAAA GGCAAAGGCG CGGCCCTGAT CCGCTCCTTT
GAGGCCGGCA CCCGCACTGG CGTGGTGATG ATGATGTGGG GCGCGGAAAA GGTGCAGCGG
CTGCTCATGG AGGTTTCCCT GCAGGAAGAC ATCGCCTACC TGCTGATTAC CGATGAGACC
GGCGACATCC TTGCCCACAG CGACCCGGAC CGGGTGGGCA GCCGGTATGA GAATTTCCCG
GAGATTCCGG CGGACCAGGC CCCCTCCACA ATTTCTCACC GCCGCGTGGA GCATGACAAC
GGGCCGGTAT TCGAGGTATT CAAGCAGTTT ACGCCGGACC GGCCCCCTGC CGTCCGGGGC
CGGCTCAAAA GCATGATCGA CCGGCTGCCG CCCGGAGAGC ACAAGCGGCT GTTCAACGAC
TGGTGCGCCA TGCATTTTTT CCAGGACATG GACCAGCCCC CGGTGCGCCA GTTTATCTTT
GTCGGCTTTG ACATGACCCG GCTGGACGCG GCCCGGTCCG CCTATATTCG CCGCGCAGTC
CTCAACGGCA CGGTGGTGCT GCTGATCGTG TGCACCGGCA TGCTGGCGCT GTTTTCCATT
CAGGCCTACC GGTCGGCCCG TTCCTCCTTT GTCCGTGTCA AGGCCCTTTC CGACGAGGTG
GTGGCCAACA TGCCGGCCGG CCTGGTCACC TTCGGCCCCG GCCCGGAGAT CACGTCGTGC
AACCGCCGGG CCGCCGAGAT TCTGGGTATG GCGCCCTGTC GTACGGATGA CGACCCGCTG
GACATGGACC GTTTACCGCC GCCGGTGCGG CAGGTGGCCG ACCAGGTGGT TCAGGACGGA
GGCAATGTCT CCCAGGAGGT GGAGGTGCCG GGGCCGGACG GTGTGGACCG GGTGCTGGAG
ATCGGGGCCT CCCCCATTCA GGACGAAGGC GGCCGGGTGT CCGGCTACCT GCTGCTGATA
AAAGATCTTA CCGGCATGCG CCGCCTGGAA AAAGAGGTGG CCCGCAGCCG CCGCCTGGCC
GCCATCGGCA AGCTGGCCGC GGGCGTGGCC CATGAAATCC GCAACCCGTT AAGTTCCATC
AAGGGGTTTG CCACCTATTT CAAGGAGAAG TTTTCGGATT CGGACCAGGA CAAGAAGACC
GCCGACACCA TGATTTACGA GGTGGAACGG CTCAACCGGG CCGTGACCCA GCTTCTGGAG
TTTGCCCGGC CCGTCTCCCT GGAGATAACC GAGGTAGAAC CCGGCGAGCT GATTGAGCAT
TCCCTGCGGC TGATGGAAAA CGATTTTACC AACAAGGGTA TAGAATCCAC GGCCCGCATT
CAAACGACCC GGCCCGTCAT CCGCACCGAC CGGGACCGGC TCAACCAGGT GCTGCTCAAC
CTGTATTTAA ATGCCGTGGA CGCCATGGAG AGCGGGGGCC GCCTCACCGT CACCCTGTCC
GACGGCGACA ACAACGATAC CGTGACCATC GATGTGACAG ATACCGGCCA CGGCATTGCG
GAAAAGGATA TGGAGCAGAT TTTCGATCCC TATTTTACCA CCCGAAGCCG GGGCACCGGC
CTGGGCCTGG CCATTGTCTA CAAGCTGGTG GAGAGTCTGG GCGGCACCAT CACCGTGGAG
AGCCGGGAAG GCCACGGTAC AACGTTTCAT ATCCGCGTTC CGGCATGA
 
Protein sequence
MKSRQRRTVS LKSIFLFGIV GVLLIAVPIF VFVVVDNIRT HDQRVVENMK GKGAALIRSF 
EAGTRTGVVM MMWGAEKVQR LLMEVSLQED IAYLLITDET GDILAHSDPD RVGSRYENFP
EIPADQAPST ISHRRVEHDN GPVFEVFKQF TPDRPPAVRG RLKSMIDRLP PGEHKRLFND
WCAMHFFQDM DQPPVRQFIF VGFDMTRLDA ARSAYIRRAV LNGTVVLLIV CTGMLALFSI
QAYRSARSSF VRVKALSDEV VANMPAGLVT FGPGPEITSC NRRAAEILGM APCRTDDDPL
DMDRLPPPVR QVADQVVQDG GNVSQEVEVP GPDGVDRVLE IGASPIQDEG GRVSGYLLLI
KDLTGMRRLE KEVARSRRLA AIGKLAAGVA HEIRNPLSSI KGFATYFKEK FSDSDQDKKT
ADTMIYEVER LNRAVTQLLE FARPVSLEIT EVEPGELIEH SLRLMENDFT NKGIESTARI
QTTRPVIRTD RDRLNQVLLN LYLNAVDAME SGGRLTVTLS DGDNNDTVTI DVTDTGHGIA
EKDMEQIFDP YFTTRSRGTG LGLAIVYKLV ESLGGTITVE SREGHGTTFH IRVPA