| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2791 |
|---|
| Symbol | |
|---|
| ID | 5695648 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | - |
|---|
| Start bp | 3366760 |
|---|
| End bp | 3368178 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641265405 |
|---|
| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
|---|
| Protein accession | YP_001530671 |
|---|
| Protein GI | 158522801 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
|---|
| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGATG TGATAGCGGC AACCGGCGGT GAGCTGGTGC AGGGAAAAGG AAACGAGATG
TTTGAAAACA TCTCCATTGA TTCGCGGACC CTTGGCAAAG GAGATCTGTT TGTGGCGATT
CAGGGTCAGC AGCATGACGG CCATGATTTT ATCGACCGGG TGCTGGCGCA GGGAGCCGGC
GGCGTGATGA TCGACCAGGC CCATGCGTCC CGGATCAATA CGCCGCGGGC AACCGGCCGG
GGGGCGCGGG TGGTGGTAAA AGACACCGTT GTCGCTCTGG GGGATCTGGC CCGTCATCGC
CGAAGAAGCG TGAATCCACG GGTGGCGGCC ATCACCGGCA CCAACGGCAA GACCAGCACC
AAGGAGATGG CGGCAATGGT ATGCGGCCGC CGGTACCGGG TGCTGGCTAC CACGGGAAAT
TTCAACAACG AGATCGGTCT GCCCCTGACC CTGCTGCGGC TGGAAAAAGG CCACCAGGTG
GCGATCCTTG AGATGGGTAT GAACGCGCCC GGCGAGATTG GGCGACTGGC AAAGATCTGC
GAGCCGGACA TGGGCGTGGT CCTCAATGTG GGGGCCGGGC ACCTGGAGGG TGTGGAAAAC
ATCGACGGCG TGGCCCGGGC CAAGGCTGAA CTTCTTGAAG CCTTGACCGA CAAGGACACG
GCCATTGTGA ATGCCGATGA CATGCGGGTC ATGAAGATGG CGCAAAAGGT CCGGGGCCGG
GTGGTGACCT ACGGCATGCG GCAGAAGGCC GATATCACCG CCGCTTCGGT CAGAAGGCAG
GACGGCCGGG TCTGTTTTGA CCTGTGCCTG TCCGCCACGG ACGAGCAGGT GGCCGTGGCC
CTTCCGGCAT CCGGCACCTT CATGGTGTCC AACGCCCTGG CCGCCGCCGC CATCGGGGCC
GGTCTGGGTC TGTCCGCGCC GGAGATCAAG GCCGGGCTGG AGAACTTTTC TCCGGTGCCC
GGCAGAATGA CCATTACGCA GACCAGGGCC GGGTTTACCC TGGTGGATGA CACGTATAAC
GCCAATCCGG AATCGATGAA GGCGGCCCTG GCCGGATTGC GGGAGTTGAA AGGGGCCGGG
CGCGGTATCC TGATTATGGG CGACATGTTT GAACTGGGGG ATCACGCGCC GGTGATGCAC
GGCAAAACAG GCGTCATGGC GGCCGAAAGC GGTGTGGACA GGCTCTATGT GACGGGTGAA
TTTGCGGAAG CGGTAGCCGG GGGCGCCGCT GCTGCCGGCA TGACGCCTGA AAAAATTATG
ATTGAATCAA AAGAAACAAT CATCGAAGCG GTATGCCCGG TCCTGGAACC GGGGGACTGG
GTCCTGGTGA AGGGTTCCCG GGGCATGCGG ATGGAGACCG TTGTTCAGGC CCTTTCGGCC
TACGGTAACG GCGCCGCGGA CAGGGAAGGG GGGCGGTAG
|
|---|
| Protein sequence | MSDVIAATGG ELVQGKGNEM FENISIDSRT LGKGDLFVAI QGQQHDGHDF IDRVLAQGAG
GVMIDQAHAS RINTPRATGR GARVVVKDTV VALGDLARHR RRSVNPRVAA ITGTNGKTST
KEMAAMVCGR RYRVLATTGN FNNEIGLPLT LLRLEKGHQV AILEMGMNAP GEIGRLAKIC
EPDMGVVLNV GAGHLEGVEN IDGVARAKAE LLEALTDKDT AIVNADDMRV MKMAQKVRGR
VVTYGMRQKA DITAASVRRQ DGRVCFDLCL SATDEQVAVA LPASGTFMVS NALAAAAIGA
GLGLSAPEIK AGLENFSPVP GRMTITQTRA GFTLVDDTYN ANPESMKAAL AGLRELKGAG
RGILIMGDMF ELGDHAPVMH GKTGVMAAES GVDRLYVTGE FAEAVAGGAA AAGMTPEKIM
IESKETIIEA VCPVLEPGDW VLVKGSRGMR METVVQALSA YGNGAADREG GR
|
|---|
| |