Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dole_2700 |
Symbol | |
ID | 5695555 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfococcus oleovorans Hxd3 |
Kingdom | Bacteria |
Replicon accession | NC_009943 |
Strand | + |
Start bp | 3253775 |
End bp | 3257083 |
Gene Length | 3309 bp |
Protein Length | 1102 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 641265312 |
Product | PAS/PAC sensor hybrid histidine kinase |
Protein accession | YP_001530580 |
Protein GI | 158522710 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACCACG GATTGCGACT TTCAAAACAG CTGTACCTGG CAGCGTTTCT GCTGCTCTCT ATTTCCCTGT TGTCCGTACC CTTTACCCTT GCCGGCGGCG ACAAACACGG TGCCCTGGAG TTGACTCCGG AAGAACGGAT ATGGCTTGAT GAAAACCCGG ATAAGCTGGC CCTCTGGTTT AACACCGAAT TCCCTCCCAT TGAATTTGCT TCCGACACCG GCGTTTTTAC CGGCATGGGC GCGGACGTGA TCGCCCTTGT GGAAGACCTG CTGGATGTTG CCTTTATCAG GCAGCCCTGC GAAGACTGGA ACCGGCACCT GACAGCCCTG GCCTCCGGGG AGTGCGCCAT TGCGCCCACC ATCGTGGCCA CTCCTGAAAG AGAAGCGTAC GCCTTTTTCA CCCAGCCCTA TGCCACGGTG CCTGTGGTGA TCATCACCCG CCGGGGCGCT TCCCATGACA TGACCATAAA CGATCTGCTG GGCAAGCGGG TGGCCGTTGT GTCCGGGTAT GCCACAGAAA GCTACGCTTC GAGGCATTCC CTGCGGGTGG GGTTTAACGT GGTGCCGGTG TCCAATGTGG TCGAAGGGCT TCACACCGTC TCCCTGGGCC ACGTGGACGC ATTTCTGGAA AACCTGGCGG TGGCCGCCTA CTACATCGAC AGGGAGGGCA TCTCCAACCT GTCCGTGGCC GGCGCCACGG ACTACGCTTT TGCCTGGAGC ATCGGCGTCA GCCGCCGGTA TCCGCTGCTG TTCAGCGCCA TTCAGAAGGC CATTGATGCG ATCCCCGCAA ACGAGATGCA GGCCGCCCAC CGAAAATGGA TATCCCTGGA GGTGTCCAAC TGGCTGAGCC CGGAAACATG GCGCCTGATC TGGGTGATCG CCGGGTTCGG TGTCTTGCTG ATTGCGGGGC TGATTGTTAT CACCTATGCG CTGCGCCGCC GGCTCAGGGA AAAGGTCGCC AACCTGGAAC AGGCCCAGCA GAAAATCATT GAGCAGGCCG ACCGGCTGCG TCTGGCCACT GAAGCCCTTC AGGCCGGTGT GTGGGACTCC TACCCGATTC AGCAAAAAAC CCATTTAAGC CGGCAGTGGT GTGCCATGCT GGGTTATCCG GACGCGGCCA GAGAATTCCC CGAGGAGGAA TTTATCAGGA CCTTTATTCA TCCCGACGAT CTTCCGGCAG CAGACAAAGC CTTTCAGGGG CACATTGCTT CCGGCGGACA TGGACAGTTT GAGGCCGAAT TCCGGCTGCG CAGGGCCGAC GGTACCTGGT GCTGGGTGCT CTGCAACGGC CGGGCCGTTG AGTGGGATGA AAACGGGGCC GTCTCCCGTA TCATCGGCCT GGATGTCAAC ATCCAGAGCA TCAAAGAGAA CCAGGAGCGG CTGGCTGCAA GCGAGGCCCG ATTCCGGGCT GTTTTCGAAA ACGCGCCCTA CGCCATTGTG ATCAGCGATT CTGAAACCGG GCAACTGCTG TCGGCCAACA ATGAGTTTCT CCAACGCCGG GGCCTTGACC GGACGGCGCT GTCTACCGCC AATATCTGGG ATTTTTCTTC CCTTCCTGAA GAGGAAGCTA TCGATATCAT CAACACCCTG TGGACCACCG GGTCGATAAA AAACCGTGAG GCCACGGTGA CACGAAAGGA CGGAAGCCTC GGACACCTTC TGTACTCGTC GGTAATACTG GAGATCGAGG ACAAAAAACA GATCCTTACC ATGACAGTGG ATGTGACGGA AAAACGGCAG GCCGAGGAGG CTTTAAAGCA AAGTGAAGCC CGCTTTCGAT CGCTTTTCAA AATGGCGCCG GTTCCCCTGG CCGCCATTTC CCTGAATGGC GAGATACTGG ATGTCAATGA CCGTCTCACC GAGGTGGTGG GCTACACCAT GGACGATGCC CCTACCATGG ATCACTGGTG GCGCCTGGCC TATCCCGATC CCGATTACCG GAAGCGGCTG ATGGCGGGCT GGCAGGACAC GATTGATCGG GCCGCGAAAA GCGCCACACC GGTCACCATG GGTGAAATCC GGGTGACCTG CAAAAACGGC ATCGAACGGA CCATGATCAT CGGCGCCAAC CGCATCGAAG AAAGCCTGCT GATCAGTTTT TTTGACATCA CGGCCCGAAA AAAAGCGGAG GCGGAGCGGG AAAAACTCCA GGAGCAGCTG CTTCAGGCCC AGAAGCTGGA GGCGGTGGGA GTTCTGGCCG GAGGCGTGGC CCATGATTTT AACAACATGC TGGGCGCCAT CATCGGGTTT GCAGAACTGG CCATCGAGGC AACAGACAGC GACAGCCCGC AATACAAGTA CCTGGAAAAC ATACTTCAGG CGGCCCGCCA CTCCGCCGAT CTCACCGGCC AGCTTCTGGC CTTTGCCCGC AAACAGACCA TTGTGCCTAC TGTGCTGGAC CTCAACGCGT CGGTGGAGGG CCTGCTTAAA ATTCTTTCCC GGCTCATGGG GGAAAACATC GAACTGGCGT GGCAACCCGG ACCCGGGCAC TGTACCGTCC GGCTGGACCC CTCCCAGTTA AACCAGGTGG TGACAAACCT CTGCATTAAT GCCAGGGACG CCATTGTGGA TGTGGGCAAC ATCACACTTG AAACCGACAC GCTCTTTTTT GACCAGGACT ATTGCGATAC CCATGCCGAA TTTACACCGG GTGAGTATGT GATGCTGGCG GTGAGTGACA ACGGGGTCGG CATGGACCGC CAGACCATGG ACCATGTGTT TGACCCCTTT TTCACCACCA AAAAACAGGG CAAGGGAACC GGCCTGGGCC TGGCCACGGT GTACGGCATC GTCAAACAGA ACAATGGGTT TATCAGCGTA TACAGTGAAC CTGGTAACGG GTCCACCTTT CGAGTCTATT TCCCGCGGCA CAGGGCCGAG GAGGAGGAGG AGCCGGACCG GCCGGAATCA GCGGAAGAAC CGTTCACCAC CGGCCGCAAG GAGACCATCC TGATCGTGGA GGATGATCCG GTGCTTTTGG AAATGGGAAC CATTATGGTG CAACGGCTGG GATACTCGGT CATGGCGGCA GCCACTCCCC AGGAAGCACT GGAAATGGTG GATACGCACG GCACGGCCAT TGACCTGATG ATCACCGATG TGGTGATGCC GGAAATGAAC GGTAAATATC TGGCAGACCA GATTCAGGAG ATCTGCCCCG AGATCCGGCT GATTTTCATG TCCGGCTACA CCGCCAATGT CATTGTTCAC CAGGGTGTGC TGGAAGAAGG CATCGATTTC ATACAGAAGC CCTTTTCTCT GCAGAACCTG GCCGCCAAGA TCCGTGAGGT GCTGAAGCGG ACGGTGTGA
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Protein sequence | MNHGLRLSKQ LYLAAFLLLS ISLLSVPFTL AGGDKHGALE LTPEERIWLD ENPDKLALWF NTEFPPIEFA SDTGVFTGMG ADVIALVEDL LDVAFIRQPC EDWNRHLTAL ASGECAIAPT IVATPEREAY AFFTQPYATV PVVIITRRGA SHDMTINDLL GKRVAVVSGY ATESYASRHS LRVGFNVVPV SNVVEGLHTV SLGHVDAFLE NLAVAAYYID REGISNLSVA GATDYAFAWS IGVSRRYPLL FSAIQKAIDA IPANEMQAAH RKWISLEVSN WLSPETWRLI WVIAGFGVLL IAGLIVITYA LRRRLREKVA NLEQAQQKII EQADRLRLAT EALQAGVWDS YPIQQKTHLS RQWCAMLGYP DAAREFPEEE FIRTFIHPDD LPAADKAFQG HIASGGHGQF EAEFRLRRAD GTWCWVLCNG RAVEWDENGA VSRIIGLDVN IQSIKENQER LAASEARFRA VFENAPYAIV ISDSETGQLL SANNEFLQRR GLDRTALSTA NIWDFSSLPE EEAIDIINTL WTTGSIKNRE ATVTRKDGSL GHLLYSSVIL EIEDKKQILT MTVDVTEKRQ AEEALKQSEA RFRSLFKMAP VPLAAISLNG EILDVNDRLT EVVGYTMDDA PTMDHWWRLA YPDPDYRKRL MAGWQDTIDR AAKSATPVTM GEIRVTCKNG IERTMIIGAN RIEESLLISF FDITARKKAE AEREKLQEQL LQAQKLEAVG VLAGGVAHDF NNMLGAIIGF AELAIEATDS DSPQYKYLEN ILQAARHSAD LTGQLLAFAR KQTIVPTVLD LNASVEGLLK ILSRLMGENI ELAWQPGPGH CTVRLDPSQL NQVVTNLCIN ARDAIVDVGN ITLETDTLFF DQDYCDTHAE FTPGEYVMLA VSDNGVGMDR QTMDHVFDPF FTTKKQGKGT GLGLATVYGI VKQNNGFISV YSEPGNGSTF RVYFPRHRAE EEEEPDRPES AEEPFTTGRK ETILIVEDDP VLLEMGTIMV QRLGYSVMAA ATPQEALEMV DTHGTAIDLM ITDVVMPEMN GKYLADQIQE ICPEIRLIFM SGYTANVIVH QGVLEEGIDF IQKPFSLQNL AAKIREVLKR TV
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