Gene Dole_2700 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_2700 
Symbol 
ID5695555 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp3253775 
End bp3257083 
Gene Length3309 bp 
Protein Length1102 aa 
Translation table11 
GC content58% 
IMG OID641265312 
ProductPAS/PAC sensor hybrid histidine kinase 
Protein accessionYP_001530580 
Protein GI158522710 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACCACG GATTGCGACT TTCAAAACAG CTGTACCTGG CAGCGTTTCT GCTGCTCTCT 
ATTTCCCTGT TGTCCGTACC CTTTACCCTT GCCGGCGGCG ACAAACACGG TGCCCTGGAG
TTGACTCCGG AAGAACGGAT ATGGCTTGAT GAAAACCCGG ATAAGCTGGC CCTCTGGTTT
AACACCGAAT TCCCTCCCAT TGAATTTGCT TCCGACACCG GCGTTTTTAC CGGCATGGGC
GCGGACGTGA TCGCCCTTGT GGAAGACCTG CTGGATGTTG CCTTTATCAG GCAGCCCTGC
GAAGACTGGA ACCGGCACCT GACAGCCCTG GCCTCCGGGG AGTGCGCCAT TGCGCCCACC
ATCGTGGCCA CTCCTGAAAG AGAAGCGTAC GCCTTTTTCA CCCAGCCCTA TGCCACGGTG
CCTGTGGTGA TCATCACCCG CCGGGGCGCT TCCCATGACA TGACCATAAA CGATCTGCTG
GGCAAGCGGG TGGCCGTTGT GTCCGGGTAT GCCACAGAAA GCTACGCTTC GAGGCATTCC
CTGCGGGTGG GGTTTAACGT GGTGCCGGTG TCCAATGTGG TCGAAGGGCT TCACACCGTC
TCCCTGGGCC ACGTGGACGC ATTTCTGGAA AACCTGGCGG TGGCCGCCTA CTACATCGAC
AGGGAGGGCA TCTCCAACCT GTCCGTGGCC GGCGCCACGG ACTACGCTTT TGCCTGGAGC
ATCGGCGTCA GCCGCCGGTA TCCGCTGCTG TTCAGCGCCA TTCAGAAGGC CATTGATGCG
ATCCCCGCAA ACGAGATGCA GGCCGCCCAC CGAAAATGGA TATCCCTGGA GGTGTCCAAC
TGGCTGAGCC CGGAAACATG GCGCCTGATC TGGGTGATCG CCGGGTTCGG TGTCTTGCTG
ATTGCGGGGC TGATTGTTAT CACCTATGCG CTGCGCCGCC GGCTCAGGGA AAAGGTCGCC
AACCTGGAAC AGGCCCAGCA GAAAATCATT GAGCAGGCCG ACCGGCTGCG TCTGGCCACT
GAAGCCCTTC AGGCCGGTGT GTGGGACTCC TACCCGATTC AGCAAAAAAC CCATTTAAGC
CGGCAGTGGT GTGCCATGCT GGGTTATCCG GACGCGGCCA GAGAATTCCC CGAGGAGGAA
TTTATCAGGA CCTTTATTCA TCCCGACGAT CTTCCGGCAG CAGACAAAGC CTTTCAGGGG
CACATTGCTT CCGGCGGACA TGGACAGTTT GAGGCCGAAT TCCGGCTGCG CAGGGCCGAC
GGTACCTGGT GCTGGGTGCT CTGCAACGGC CGGGCCGTTG AGTGGGATGA AAACGGGGCC
GTCTCCCGTA TCATCGGCCT GGATGTCAAC ATCCAGAGCA TCAAAGAGAA CCAGGAGCGG
CTGGCTGCAA GCGAGGCCCG ATTCCGGGCT GTTTTCGAAA ACGCGCCCTA CGCCATTGTG
ATCAGCGATT CTGAAACCGG GCAACTGCTG TCGGCCAACA ATGAGTTTCT CCAACGCCGG
GGCCTTGACC GGACGGCGCT GTCTACCGCC AATATCTGGG ATTTTTCTTC CCTTCCTGAA
GAGGAAGCTA TCGATATCAT CAACACCCTG TGGACCACCG GGTCGATAAA AAACCGTGAG
GCCACGGTGA CACGAAAGGA CGGAAGCCTC GGACACCTTC TGTACTCGTC GGTAATACTG
GAGATCGAGG ACAAAAAACA GATCCTTACC ATGACAGTGG ATGTGACGGA AAAACGGCAG
GCCGAGGAGG CTTTAAAGCA AAGTGAAGCC CGCTTTCGAT CGCTTTTCAA AATGGCGCCG
GTTCCCCTGG CCGCCATTTC CCTGAATGGC GAGATACTGG ATGTCAATGA CCGTCTCACC
GAGGTGGTGG GCTACACCAT GGACGATGCC CCTACCATGG ATCACTGGTG GCGCCTGGCC
TATCCCGATC CCGATTACCG GAAGCGGCTG ATGGCGGGCT GGCAGGACAC GATTGATCGG
GCCGCGAAAA GCGCCACACC GGTCACCATG GGTGAAATCC GGGTGACCTG CAAAAACGGC
ATCGAACGGA CCATGATCAT CGGCGCCAAC CGCATCGAAG AAAGCCTGCT GATCAGTTTT
TTTGACATCA CGGCCCGAAA AAAAGCGGAG GCGGAGCGGG AAAAACTCCA GGAGCAGCTG
CTTCAGGCCC AGAAGCTGGA GGCGGTGGGA GTTCTGGCCG GAGGCGTGGC CCATGATTTT
AACAACATGC TGGGCGCCAT CATCGGGTTT GCAGAACTGG CCATCGAGGC AACAGACAGC
GACAGCCCGC AATACAAGTA CCTGGAAAAC ATACTTCAGG CGGCCCGCCA CTCCGCCGAT
CTCACCGGCC AGCTTCTGGC CTTTGCCCGC AAACAGACCA TTGTGCCTAC TGTGCTGGAC
CTCAACGCGT CGGTGGAGGG CCTGCTTAAA ATTCTTTCCC GGCTCATGGG GGAAAACATC
GAACTGGCGT GGCAACCCGG ACCCGGGCAC TGTACCGTCC GGCTGGACCC CTCCCAGTTA
AACCAGGTGG TGACAAACCT CTGCATTAAT GCCAGGGACG CCATTGTGGA TGTGGGCAAC
ATCACACTTG AAACCGACAC GCTCTTTTTT GACCAGGACT ATTGCGATAC CCATGCCGAA
TTTACACCGG GTGAGTATGT GATGCTGGCG GTGAGTGACA ACGGGGTCGG CATGGACCGC
CAGACCATGG ACCATGTGTT TGACCCCTTT TTCACCACCA AAAAACAGGG CAAGGGAACC
GGCCTGGGCC TGGCCACGGT GTACGGCATC GTCAAACAGA ACAATGGGTT TATCAGCGTA
TACAGTGAAC CTGGTAACGG GTCCACCTTT CGAGTCTATT TCCCGCGGCA CAGGGCCGAG
GAGGAGGAGG AGCCGGACCG GCCGGAATCA GCGGAAGAAC CGTTCACCAC CGGCCGCAAG
GAGACCATCC TGATCGTGGA GGATGATCCG GTGCTTTTGG AAATGGGAAC CATTATGGTG
CAACGGCTGG GATACTCGGT CATGGCGGCA GCCACTCCCC AGGAAGCACT GGAAATGGTG
GATACGCACG GCACGGCCAT TGACCTGATG ATCACCGATG TGGTGATGCC GGAAATGAAC
GGTAAATATC TGGCAGACCA GATTCAGGAG ATCTGCCCCG AGATCCGGCT GATTTTCATG
TCCGGCTACA CCGCCAATGT CATTGTTCAC CAGGGTGTGC TGGAAGAAGG CATCGATTTC
ATACAGAAGC CCTTTTCTCT GCAGAACCTG GCCGCCAAGA TCCGTGAGGT GCTGAAGCGG
ACGGTGTGA
 
Protein sequence
MNHGLRLSKQ LYLAAFLLLS ISLLSVPFTL AGGDKHGALE LTPEERIWLD ENPDKLALWF 
NTEFPPIEFA SDTGVFTGMG ADVIALVEDL LDVAFIRQPC EDWNRHLTAL ASGECAIAPT
IVATPEREAY AFFTQPYATV PVVIITRRGA SHDMTINDLL GKRVAVVSGY ATESYASRHS
LRVGFNVVPV SNVVEGLHTV SLGHVDAFLE NLAVAAYYID REGISNLSVA GATDYAFAWS
IGVSRRYPLL FSAIQKAIDA IPANEMQAAH RKWISLEVSN WLSPETWRLI WVIAGFGVLL
IAGLIVITYA LRRRLREKVA NLEQAQQKII EQADRLRLAT EALQAGVWDS YPIQQKTHLS
RQWCAMLGYP DAAREFPEEE FIRTFIHPDD LPAADKAFQG HIASGGHGQF EAEFRLRRAD
GTWCWVLCNG RAVEWDENGA VSRIIGLDVN IQSIKENQER LAASEARFRA VFENAPYAIV
ISDSETGQLL SANNEFLQRR GLDRTALSTA NIWDFSSLPE EEAIDIINTL WTTGSIKNRE
ATVTRKDGSL GHLLYSSVIL EIEDKKQILT MTVDVTEKRQ AEEALKQSEA RFRSLFKMAP
VPLAAISLNG EILDVNDRLT EVVGYTMDDA PTMDHWWRLA YPDPDYRKRL MAGWQDTIDR
AAKSATPVTM GEIRVTCKNG IERTMIIGAN RIEESLLISF FDITARKKAE AEREKLQEQL
LQAQKLEAVG VLAGGVAHDF NNMLGAIIGF AELAIEATDS DSPQYKYLEN ILQAARHSAD
LTGQLLAFAR KQTIVPTVLD LNASVEGLLK ILSRLMGENI ELAWQPGPGH CTVRLDPSQL
NQVVTNLCIN ARDAIVDVGN ITLETDTLFF DQDYCDTHAE FTPGEYVMLA VSDNGVGMDR
QTMDHVFDPF FTTKKQGKGT GLGLATVYGI VKQNNGFISV YSEPGNGSTF RVYFPRHRAE
EEEEPDRPES AEEPFTTGRK ETILIVEDDP VLLEMGTIMV QRLGYSVMAA ATPQEALEMV
DTHGTAIDLM ITDVVMPEMN GKYLADQIQE ICPEIRLIFM SGYTANVIVH QGVLEEGIDF
IQKPFSLQNL AAKIREVLKR TV